EMAN: semiautomated software for high-resolution single-particle reconstructions.
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Summary
EMAN (Electron Micrograph ANalysis), a software package for performing semiautomated single-particle reconstructions from transmission electron micrographs, was written from scratch in C++ and is provided free of charge on the Web site.
- Type
- article
- Published
- 1999-12-01
- Cited by
- 2,597
- References
- 32
- OpenAlex
- https://openalex.org/W2006158980
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:19019545
Keywords
Single particle analysis, Computer science, Software, Projection (relational algebra), Symmetry (geometry)
References
- A new generation of the IMAGIC image processing system.
- Exact filters for general geometry three dimensional reconstruction
- DETECTION OF OBJECTS IN QUANTUM-NOISE-LIMITED IMAGES
- The Fourier Transform of an Electron Micrograph: Effects of Defocussing and Aberrations, and Implications for the Use of Underfocus Contrast Enhancement
- MRC image processing programs.
- The structure of the R-type straight flagellar filament of Salmonella at 9 A resolution by electron cryomicroscopy.
- Procedures for three-dimensional reconstruction of spherical viruses by Fourier synthesis from electron micrographs.
- Two structural configurations of the skeletal muscle calcium release channel
- The structure of bacteriorhodopsin at 3.0 A resolution based on electron crystallography: implication of the charge distribution.
- A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy.
- Scaling structure factor amplitudes in electron cryomicroscopy using X-Ray solution scattering.
- SUPRIM: easily modified image processing software.
- PHOELIX: a package for semi-automated helical reconstruction.
- Automatic selection of molecular images from electron micrographs
- Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy
- SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields.
- Image analysis of single macromolecules.
- Solution x-ray scattering-based estimation of electron cryomicroscopy imaging parameters for reconstruction of virus particles.
- Identification of spherical virus particles in digitized images of entire electron micrographs.
- Visualization of alpha-helices in tobacco mosaic virus by cryo-electron microscopy.
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- CFTR three-dimensional structure.
- Review: automatic particle detection in electron microscopy.
- Structure of functional single AQP0 channels in phospholipid membranes.
- Protein structure dynamics and interplay : by single-particle electron microscopy
- A 9 Å single particle reconstruction from CCD captured images on a 200 kV electron cryomicroscope
- The 17A structure of the 420 kDa lobster clottable protein by single particle reconstruction from cryoelectron micrographs.
- The inter‐ring arrangement of the cytosolic chaperonin CCT
- The structures of bacteriophages K1E and K1-5 explain processive degradation of polysaccharide capsules and evolution of new host specificities.
- Structural basis for the PufX-mediated dimerization of bacterial photosynthetic core complexes.
- Deriving Topology and Sequence Alignment for the Helix Skeleton in Low-Resolution protein Density Maps
- Structural model of the circadian clock KaiB–KaiC complex and mechanism for modulation of KaiC phosphorylation
- Structural comparisons of hepatitis B core antigen particles with different C-terminal lengths.
- Crystal structure of the Caenorhabditis elegans apoptosome reveals an octameric assembly of CED-4.
- Structural organization of the functional domains of Clostridium difficile toxins A and B
- Understanding ribosome assembly: the structure of in vivo assembled immature 30S subunits revealed by cryo-electron microscopy.
- Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph
- Structural dynamics of transmembrane signaling complexes by negative stain electron microscopy
- Structural analysis of the core COMPASS family of histone H3K4 methylases from yeast to human
- Calcium and pH-dependent packing and release of the gel-forming MUC2 mucin
- Subunit Interactions and Cooperativity in the Microtubule-severing AAA ATPase Spastin*
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