Evolution of tRNA-like sequences and genome variability.
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Summary
An analysis of the integrity of RNA polymerase III inner promoters in the tRNA-like sequences over the GenBank divisions has shown a high possibility of generating new copies of short interspersed nuclear element (SINE) repeats in all divisions, excepting primates.
- Type
- article
- Published
- 2004-06-23
- Cited by
- 26
- References
- 44
- OpenAlex
- https://openalex.org/W1967852206
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:18538870
Keywords
Biology, Transfer RNA, RNA polymerase III, Genetics, GenBank
References
- Compilation of tRNA sequences and sequences of tRNA genes
- GeneBee-net: Internet-based server for analyzing biopolymers
- Evolution of MIR Elements Located in the Coding Regions of Human Genome
- Introduction to computational biology
- Regulation of Synthesis of Methionyl-, Prolyl-, and Threonyl-Transfer Ribonucleic Acid Synthetases of Escherichia coli
- Repbase update: a database and an electronic journal of repetitive elements.
- Profile analysis: detection of distantly related proteins.
- Identification and structural analysis of SINE elements in the Arabidopsis thaliana genome.
- Target-cell-derived tRNA-like primers for reverse transcription support retroviral infection at low efficiency.
- Novel features in the tRNA-like world of plant viral RNAs
- Identification of new eukaryotic tRNA genes in genomic DNA databases by a multistep weight matrix analysis of transcriptional control regions.
- The origin of interspersed repeats in the human genome.
- RNA sequence analysis using covariance models.
- An operational RNA code for amino acids and possible relationship to genetic code.
- Censor - a Program for Identification and Elimination of Repetitive Elements From DNA Sequences
- Evolution of tRNA recognition systems and tRNA gene sequences
- [A bacterial RNA that functions both as a tRNA and an mRNA].
- Identification of the 10Sa RNA structural gene of Mycobacterium tuberculosis
- Weighting aligned protein or nucleic acid sequences to correct for unequal representation.
- SINEs and LINEs: the art of biting the hand that feeds you.
Cited by
- Identification of mollicutes and characterisation of Mycoplasma hyopneumoniae isolates
- tRNA-like elements in Haloferax volcanii.
- THE METHODS OF IDENTIFYING SINES AND STUDIES IN FISH GENOME: THE METHODS OF IDENTIFYING SINES AND STUDIES IN FISH GENOME
- Genomic organization of eukaryotic tRNAs
- Evolutionary patterns of non-coding RNAs
- A sequence similar to tRNA3Lys gene is embedded in HIV-1 U3/R and promotes minus strand transfer
- Human tRNA genes function as chromatin insulators
- Using Triplet Periodicity of Nucleotide Sequences for Finding Potential Reading Frame Shifts in Genes
- The Origin and Evolution of Six Miniature Inverted-Repeat Transposable Elements in Bombyx mori and Rhodnius prolixus
- Evaluation of tRNA Gene PCR for Identification of Mollicutes
- A novel class of miniature inverted repeat transposable elements (MITEs) that contain hitchhiking (GTCY)n microsatellites
- Search and classification of potential minisatellite sequences from bacterial genomes.
- Expansion of Noncanonical V-Arm-Containing tRNAs in Eukaryotes.
- tRNomics: Genomic Organization and Processing Patterns of tRNAs
- SMORE: Synteny Modulator of Repetitive Elements
- The unique tRNASec and its role in selenocysteine biosynthesis
- tRNA Genes Affect Chromosome Structure and Function via Local Effects
- The Ribosome as a Missing Link in Prebiotic Evolution III: Over-Representation of tRNA- and rRNA-Like Sequences and Plieofunctionality of Ribosome-Related Molecules Argues for the Evolution of Primitive Genomes from Ribosomal RNA Modules
- Seryl-tRNA synthetase specificity for tRNASec in Bacterial Sec biosynthesis.
- Multiple Alignment of Promoter Sequences from the Human Genome
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