Exome sequencing reveals frequent inactivating mutations in ARID1A, ARID1B, ARID2 and ARID4A in microsatellite unstable colorectal cancer

Keywords

ARID1A, Biology, Exome sequencing, Genetics, Gene

References

• Population-based molecular detection of hereditary nonpolyposis colorectal cancer.Reijo Salovaara, Anu Loukola, Paula Kristo — 2000
• An integrated genomic approach identifies ARID1A as a candidate tumor-suppressor gene in breast cancerAline Mamo, Luca Cavallone, Şükrü Tüzmen — 2012
• Frequent Mutations of Chromatin Remodeling Gene ARID1A in Ovarian Clear Cell CarcinomaSiân Jones, Tian‐Li Wang, Ie‐Ming Shih — 2010
• Two related ARID family proteins are alternative subunits of human SWI/SNF complexes.Xiaomei Wang, Norman G. Nagl, Deborah Wilsker — 2004
• The landscape of cancer genes and mutational processes in breast cancerPhilip J. Stephens, Patrick Tarpey, Helen Davies — 2012
• Tumorigenesis: RAF/RAS oncogenes and mismatch-repair statusHarith Rajagopalan, Alberto Bardelli, Christoph Lengauer — 2002
• DNA-binding properties of ARID family proteinsAntonia Patsialou — 2005
• Alterations of BRMS1-ARID4A Interaction Modify Gene Expression but Still Suppress Metastasis in Human Breast Cancer Cells*Douglas R. Hurst, Yi Xie, Kedar S. Vaidya — 2008
• PBAF chromatin-remodeling complex requires a novel specificity subunit, BAF200, to regulate expression of selective interferon-responsive genes.Zhijiang Yan, Kairong Cui, Darryl Murray — 2005
• Identification of candidate oncogenes in human colorectal cancers with microsatellite instability.Alexandra E. Gylfe, Johanna Kondelin, Mikko Turunen — 2013
• Somatic mutations in the chromatin remodeling gene ARID1A occur in several tumor typesSiân Jones, Meng Li, D. Williams Parsons — 2011
• Background mutation frequency in microsatellite-unstable colorectal cancer.Heli Sammalkorpi, Pia Alhopuro, Rainer Lehtonen — 2007
• Distinct mammalian SWI/SNF chromatin remodeling complexes with opposing roles in cell‐cycle controlNorman G. Nagl, Xiaomei Wang, Antonia Patsialou — 2007
• Neurodegeneration: A repeat offenseEva Chmielnicki — 2013
• Incidence of hereditary nonpolyposis colorectal cancer and the feasibility of molecular screening for the disease.Lauri A. Aaltonen, Reijo Salovaara, Paula Kristo — 1998
• ARID1A loss correlates with mismatch repair deficiency and intact p53 expression in high-grade endometrial carcinomasGhassan Allo, Marcus Q. Bernardini, Ren‐Chin Wu — 2013
• ARID1B, a member of the human SWI/SNF chromatin remodeling complex, exhibits tumour-suppressor activities in pancreatic cancer cell linesMd Khursheed, Jayaprakash Narayana Kolla, Viswakalyan Kotapalli — 2013
• The Spectrum of SWI/SNF Mutations, Ubiquitous in Human CancersA. Hunter Shain, Jonathan R. Pollack — 2013
• Genomics and proteomics approaches to the study of cancer-stroma interactionsFlávia Cristina Rodrigues‐Lisoni, Paulo Peitl, Alessandra Vidotto — 2010
• Global Cancer Statistics, 2002Donald Maxwell Parkin, Freddie Bray, Jacques Ferlay — 2005

Cited by

• SWI/SNF-deficient cancers of the Gastroenteropancreatic tract: an in-depth review of the literature and pathology.Nick Freemantle, John Wood, J. Eastaugh — 2020
• From Tissue to Mutations : Genetic Profiling of Colorectal CancerLucy Mathot — 2014
• miR-208-3p promotes hepatocellular carcinoma cell proliferation and invasion through regulating ARID2 expressionPeng Yu, Dingguo Wu, Yu You — 2015
• The ARID1B phenotype: What we have learned so farGijs W.E. Santen, Jill Clayton‐Smith — 2014
• Chromatin-Remodeling-Factor ARID1B Represses Wnt/β-Catenin Signaling.Georgia Vasileiou, Arif B. Ekici, Steffen Uebe — 2015
• SWI/SNF Chromatin Remodeling Complexes and CancerJaclyn A. Biegel, Tracy Busse, Bernard E. Weissman — 2014
• Immunohistochemical detection of ARID1A in colorectal carcinoma: loss of staining is associated with sporadic microsatellite unstable tumors with medullary histology and high TNM stage.Jiqing Ye, Yi Zhou, Martin R. Weiser — 2014
• The Expanding Family of SMARCB1(INI1)-deficient Neoplasia: Implications of Phenotypic, Biological, and Molecular HeterogeneityAbbas Agaimy — 2014
• The emerging roles of ARID1A in tumor suppressionRen‐Chin Wu, Tian‐Li Wang, Ie‐Ming Shih — 2014
• Microsatellite instability: an updateHiroyuki Yamamoto, Kohzoh Imai — 2015
• Frequent loss of the expression of multiple subunits of the SWI/SNF complex in large cell carcinoma and pleomorphic carcinoma of the lungTaichiro Yoshimoto, Daisuke Matsubara, Tomoyuki Nakano — 2015
• Epigenetic and genetic dispositions of ovarian carcinomasKen Yamaguchi, Noriomi Matsumura, Masaki Mandai — 2014
• Clinicopathological and Targeted Exome Gene Features of a Patient with Metastatic Acinic Cell Carcinoma of the Parotid Gland Harboring an ARID2 Nonsense Mutation and CDKN2A/B DeletionWayne A. Warner, Deborah J. Wong, Fernando Palma‐Diaz — 2015
• Clinicopathologic and prognostic relevance of ARID1A protein loss in colorectal cancer.Xiao-Li Wei — 2014
• Genomic approach to translational studies in colorectal cancerDane Cheasley, Robert N. Jorissen, Sheng Liu — 2018
• SWI/SNF Complex–deficient Undifferentiated/Rhabdoid Carcinomas of the Gastrointestinal Tract: A Series of 13 Cases Highlighting Mutually Exclusive Loss of SMARCA4 and SMARCA2 and Frequent Co-inactivation of SMARCB1 and SMARCA2Abbas Agaimy, Ondřej Daum, Bruno Märkl — 2016
• Epigenomic regulation of oncogenesis by chromatin remodelingRakesh Kumar, D-Q Li, Susanne Müller — 2016
• Genetically-defined novel oral squamous cell carcinoma cell lines for the development of molecular therapiesMuhammad Zaki Hidayatullah Fadlullah, Ivy Kim-Ni Chiang, Kalen R. Dionne — 2016
• Genomic Landscape of Colorectal Mucosa and Adenomas in Familial Adenomatous PolyposisEster Borràs, F. Anthony San Lucas, Kyle Chang — 2016
• The Chromatin Remodeling Component Arid1a Is a Suppressor of Spontaneous Mammary Tumors in MiceNithya Kartha, Li Shen, Carolyn R. Maskin — 2016

Related papers

• The GENCODE exome: sequencing the complete human exomeAlison J. Coffey, Felix Kokocinski, Maria S Calafato — 2011
• [Tumor suppressor role of chromatin-remodeling factor ARID1A].Xiaoqiang Guo, Qiaoxia Zhang, Weiren Huang — 2013
• Frequent Mutations of Chromatin Remodeling Gene ARID1A in Ovarian Clear Cell CarcinomaSiân Jones, Tian‐Li Wang, Ie‐Ming Shih — 2010
• ARID1A Mutations in Cancer: Another Epigenetic Tumor Suppressor?Jennifer N. Wu, Charles W.M. Roberts — 2012
• Clinical Exome Performance for Reporting Secondary Genetic FindingsJason Y. Park, Peter Clark, Eric Londin — 2014
• A comparative analysis of exome captureJennifer Parla, Ivan Iossifov, Ian Grabill — 2011
• Exome sequencing for neurological disordersJeffery M. Vance, Mustafa Tekin — 2017
• Abstract 1349: Improved human exome sequencing workflow with the most complete coverageManqing Hong, Bosun Min, Nicole Roseman — 2020
• [The application of exome sequencing in human disease].Shuquan Rao, Tingfu Du, Qi Xu — 2014