The genomes of the aquarium sponges Tethya wilhelma and Tethya minuta (Porifera: Demospongiae)

Keywords

Biology, Ecology, Biodiversity, Sponge, Coral reef

References

• MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies肇 高橋, 則男 嘉村, 実 長畑 — 2019
• The Amphimedon queenslandica genome and the evolution of animal complexityMansi Srivastava, Oleg Simakov, Jarrod Chapman — 2010
• Chromosome-scale shotgun assembly using an in vitro method for long-range linkageNicholas H. Putnam, Brendan L. O’Connell, Jonathan C. Stites — 2015
• De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with TrinityBrian J. Haas, Alexie Papanicolaou, Moran Yassour — 2013
• RNA interference in marine and freshwater sponges: actin knockdown in Tethya wilhelma and Ephydatia muelleri by ingested dsRNA expressing bacteriaAjna S. Rivera, Jörg U. Hammel, Karri M. Haen — 2011
• Purification of RNA using TRIzol (TRI reagent).Donald C. Rio, Manuel Ares, Gregory J. Hannon — 2010
• GABA and glutamate specifically induce contractions in the sponge Tethya wilhelmaKornelia Ellwanger, Andre Eich, Michael Nickel — 2006
• SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence informationMarten Boetzer, Walter Pirovano — 2014
• WebAUGUSTUS—a web service for training AUGUSTUS and predicting genes in eukaryotesKatharina J. Hoff, Mario Stanke — 2013
• Surviving in a Marine Desert: The Sponge Loop Retains Resources Within Coral ReefsJasper M. de Goeij, Dick van Oevelen, Mark J. A. Vermeij — 2013
• SOAPdenovo2: an empirically improved memory-efficient short-read de novo assemblerRuibang Luo, Binghang Liu, Yinlong Xie — 2012
• Sponge budding is a spatiotemporal morphological patterning process: Insights from synchrotron radiation-based x-ray microtomography into the asexual reproduction of Tethya wilhelmaJörg U. Hammel, Julia Herzen, Felix Beckmann — 2009
• Neuroactive substances specifically modulate rhythmic body contractions in the nerveless metazoon Tethya wilhelma (Demospongiae, Porifera)Kornelia Ellwanger, Michael Nickel — 2006
• Hi-C: A comprehensive technique to capture the conformation of genomesJon-Matthew Belton, Rachel Patton McCord, Johan H. Gibcus — 2012
• Evolution: A sisterly disputeMaximilian J. Telford, Leonid L. Moroz, Kenneth M. Halanych — 2016
• The Oxford Nanopore MinION: delivery of nanopore sequencing to the genomics communityMiten Jain, Hugh E. Olsen, Benedict Paten — 2016
• The genome of the contractile demosponge Tethya wilhelma and the evolution of metazoan neural signalling pathwaysWarren R. Francis, Michael Eitel, Sergio Vargas — 2017
• Direct determination of diploid genome sequencesNeil Weisenfeld, Vijay Kumar, Preyas Shah — 2016
• Dating early animal evolution using phylogenomic dataMartin Dohrmann, Gert Wörheide — 2017
• Minimap2: pairwise alignment for nucleotide sequencesHeng Li — 2017

Cited by

• Tethya wilhelma (Porifera) Is Highly Resistant to Radiation Exposure and Possibly CancerAngelo Fortunato, Jake Taylor, Jonathan Scirone — 2025
• Target-enriched multilocus assay on poriferan museum collections unsettles tethyid classification.Dirk Erpenbeck, Fabian Deister, Merrick Ekins — 2025
• Evolutionary conservation of dopamine-mediated cellular plasticity in Arctic sponges (Porifera)О. И. Кравчук, Alexander D. Finoshin, Yulia O. Nikishina — 2025

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