Using hiCLIP to identify RNA duplexes that interact with a specific RNA-binding protein
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Summary
The use of an adaptor that links the two arms of the RNA duplex permits hiCLIP to unambiguously identify the duplexes, including those that are challenging to predict computationally, such as intermolecular and long-range intramolecular duplexe.
- Type
- article
- Published
- 2017-02-23
- Cited by
- 29
- References
- 51
- Access
- Open access
- OpenAlex
- https://openalex.org/W28230851
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:3886962
Keywords
Computer science
References
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Cited by
- Advances in CLIP Technologies for Studies of Protein-RNA Interactions.
- Splicing regulation by long noncoding RNAs
- Advances and challenges towards the study of RNA-RNA interactions in a transcriptome-wide scale
- The Future of CLIP
- Beyond CLIP: advances and opportunities to measure RBP–RNA and RNA–RNA interactions
- Functional diversity of small nucleolar RNAs
- A New Way to Discover IRESs in Pathology or Stress Conditions? Harnessing Latest High-Throughput Technologies.
- Comprehensive Genome-Wide Approaches to Activity-Dependent Translational Control in Neurons
- Epitranscriptomic technologies and analyses
- RNA structures in alternative splicing and back‐splicing
- Emerging Classes of Small Non-Coding RNAs With Potential Implications in Diabetes and Associated Metabolic Disorders
- Crosslinking Immunoprecipitation and qPCR (CLIP-qPCR) Analysis to Map Interactions of Long Noncoding RNAs with Canonical and Non-canonical RNA-Binding Proteins.
- RNA immunoprecipitation to identify in vivo targets of RNA editing and modifying enzymes
- Detecting RNA–RNA interactome
- A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3′ UTR structure to RNA metabolism
- Recent advances in RNA structurome
- Non-coding RNAs in immunoregulation and autoimmunity: technological advances and critical limitations
- RNA-RNA competitive interactions: a molecular civil war ruling cell physiology and diseases
- Technological advancements in deciphering RNA-RNA interactions.
- Chemical inhibition of eIF4A3 abolishes UPF1 recruitment onto mRNA encoding NMD factors and restores their expression.
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