Genetic Variation of Human Papillomavirus Type 16 in Individual Clinical Specimens Revealed by Deep Sequencing
Explore this paper's citation graph
Summary
Deep sequencing is employed to comprehensively analyze genetic variation in the HPV16 genome isolated from individual clinical specimens and provides a fundamental framework for investigating the influence of HPV somatic genetic variation on cervical carcinogenesis.
- Type
- article
- Published
- 2013-11-13
- Cited by
- 33
- References
- 52
- Access
- Open access
- OpenAlex
- https://openalex.org/W24236186
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:30066414
Keywords
Fish , Fishery, Zoology, Biology
References
- Cellular factors required for papillomavirus DNA replication
- Modified Hirt procedure for rapid purification of extrachromosomal DNA from mammalian cells.
- Presence and expression of human papillomavirus sequences in human cervical carcinoma cell lines.
- Replication and partitioning of papillomavirus genomes.
- High throughput sequencing reveals diversity of Human Papillomaviruses in cutaneous lesions
- ABySS: a parallel assembler for short read sequence data.
- Persistence of human papillomavirus infections: keys to malignant progression
- Genomic Sequencing and Comparative Analysis of Epstein-Barr Virus Genome Isolated from Primary Nasopharyngeal Carcinoma Biopsy
- Human Papillomavirus Type 16 Genetic Variants: Phylogeny and Classification Based on E6 and LCR
- Quasispecies Theory and the Behavior of RNA Viruses
- Sequence Imputation of HPV16 Genomes for Genetic Association Studies
- Evidence for Editing of Human Papillomavirus DNA by APOBEC3 in Benign and Precancerous Lesions
- Multiplex Identification of Human Papillomavirus 16 DNA Integration Sites in Cervical Carcinomas
- Do we need a different strategy for HPV screening and vaccination in East Asia?
- Oncogenic potential diverge among human papillomavirus type 16 natural variants.
- The Hinge of the Human Papillomavirus Type 11 E2 Protein Contains Major Determinants for Nuclear Localization and Nuclear Matrix Association
- Human Skin Microbiota: High Diversity of DNA Viruses Identified on the Human Skin by High Throughput Sequencing
- DEVELOPMENT OF QUANTITATIVE AND HIGH-THROUGHPUT ASSAYS OF POLYOMAVIRUS AND PAPILLOMAVIRUS DNA REPLICATION
- Human papillomavirus genome variants
- Properties of a non‐tumorigenic human cervical keratinocyte cell line
Cited by
- Presence of Human Papillomavirus (HPV) Apolipoprotein B Messenger RNA Editing, Catalytic Polypeptide-Like 3 (APOBEC)–Related Minority Variants in HPV-16 Genomes From Anal and Cervical Samples but Not in HPV-52 and HPV-58
- Whole Genome Sequencing of A(H3N2) Influenza Viruses Reveals Variants Associated with Severity during the 2016–2017 Season
- High-level of viral genomic diversity in cervical cancers: A Brazilian study on human papillomavirus type 16.
- E5 nucleotide polymorphisms suggest quasispecies occurrence in BPV-1 sub-clinically infected horses.
- Differentiation of BHV-1 isolates from vaccine virus by high-resolution melting analysis.
- Molecular variants of human papilloma virus 16 E2, E4, E5, E6 and E7 genes associated with cervical neoplasia in Romanian patients
- Genetic variations of human papillomavirus type 16: implications for cervical carcinogenesis.
- Papillomaviruses
- High-Throughput Single-Cell Kinetics of Virus Infections in the Presence of Defective Interfering Particles
- Molecular diagnosis and phylogenetic analysis of human papillomavirus type-16 from suspected patients in Pakistan
- Characterization of Intra-Type Variants of Oncogenic Human Papillomaviruses by Next-Generation Deep Sequencing of the E6/E7 Region
- Molecular variants of human papilloma virus 16 E2, E4, E5, E6 and E7 genes associated with cervical neoplasia in Romanian
- The Biological Impact of Genomic Diversity in Cervical Cancer Development
- Deep-Sequence Identification and Role in Virus Replication of a JC Virus Quasispecies in Patients with Progressive Multifocal Leukoencephalopathy
- Ancient Evolution and Dispersion of Human Papillomavirus 58 Variants
- Whole-genome analysis of human papillomavirus genotypes 52 and 58 isolated from Japanese women with cervical intraepithelial neoplasia and invasive cervical cancer
- Diversité génétique des papillomavirus humains
- Utility of high-throughput DNA sequencing in the study of the human papillomaviruses
- Within-Host Variations of Human Papillomavirus Reveal APOBEC Signature Mutagenesis in the Viral Genome
- Disease Manifestation and Viral Sequences in a Bonobo More Than 30 Years after Papillomavirus Infection