Structure-based prediction of insertion-site preferences of transposons into chromosomes

Keywords

Computer science

References

• Target site selection in transposition.Johanna Felger, Johannes Enssle, Diana Méndez — 1997
• Coding sequences of functioning human genes derived entirely from mobile element sequences.María Ernestina Roda y Martí, María Dolores Cebrián Díaz — 2004
• A Surprising Survival Story in the Siberian ArcticRichard Stone — 2004
• Retroviral insertional mutagenesis: tagging cancer pathways.Harald Mikkers, Anton Berns — 2003
• Retroviral integration: in vitro host site selection by avian integraseM. Fitzgerald, Duane P. Grandgenett — 1994
• Transcription Start Regions in the Human Genome Are Favored Targets for MLV IntegrationXiaolin Wu, Yuan Li, Bruce Crise — 2003
• Initial sequence of the chimpanzee genome and comparison with the human genomeTarjei S. Mikkelsen — 2005
• Insertion and excision of Caenorhabditis elegans transposable element Tc1David Eide, Philip Anderson — 1988
• Gene Therapy Insertional Mutagenesis InsightsUtpal P. Davé, Nancy A. Jenkins, Neal G. Copeland — 2004
• High-Resolution Genome-Wide Mapping of Transposon Integration in MammalsStephen R. Yant, Xiaolin Wu, Yong Huang — 2005
• Transposition and gene disruption in the male germline of the mouseAdam J. Dupuy, Sabine Fritz, David A. Largaespada — 2001
• Region-specific saturation germline mutagenesis in mice using the Sleeping Beauty transposon systemVincent W. Keng, Kojiro Yae, Tomoko Hayakawa — 2005
• Longitudinal data analysis for discrete and continuous outcomes.Scott L. Zeger, Kung‐Yee Liang — 1986
• The structure of an FF domain from human HYPA/FBP11.Mark D. Allen, Assaf Friedler, Oliver Schön — 2002
• Mammalian mutagenesis using a highly mobile somatic Sleeping Beauty transposon systemAdam J. Dupuy, Keiko Akagi, David A. Largaespada — 2005
• Use of the piggyBac transposon for germ-line transformation of insects.Alfred M. Handler — 2002
• The evolutionary dynamics of repetitive DNA in eukaryotesBrian Charlesworth, Paul Sniegowski, Wolfgang Stephan — 1994
• HIV-1 integration in the human genome favors active genes and local hotspots.A. R. W. Schröder, Paul Shinn, Huaming Chen — 2002
• Sleeping beauty transposition: biology and applications for molecular therapy.Zsuzsanna Izsvák, Zoltán Ivics — 2004
• Simian virus 40 minichromosomes as targets for retroviral integration in vivo.Peter M. Pryciak, Hans‐Peter Müller, H E Varmus — 1992

Cited by

• The use of DNA transposons for cancer gene discovery in mice.George S. Vassiliou, Roland Rad, Allan Bradley — 2010
• Liver-directed gene therapy using the sleeping beauty transposon system.Lalitha R. Belur, R. Scott McIvor, Andrew Wilber — 2008
• Transposon-based technology enhances the generation of stable and high-producing CHO clones for industrial production of recombinant proteins and antibodiesDegli Studi, D. Milano, –. Bicocca — 2015
• A hybrid lentivirus-transposon vector for safer gene therapyC. Vink — 2010
• Sleeping Beauty TranspositionZoltán Ivics, Zsuzsanna Izsvák — 2015
• Computational prediction of Ds transposon insertion sites in plants using DNA structural featuresXianyan Kuang — 2011
• Characterizing the Role of 1p36 Deletion in Breast Cancer and Identifying Candidate Tumor SuppressorsChristopher S. Hackett — 2007
• Development of Augmented Leukemia/Lymphoma-Specific T-Cell Immunotherapy for Deployment with Haploidentical Hematopoietic Progenitor-Cell TransplantLaurence J.N. Cooper, Rita Young — 2009
• Nonviral Gene Delivery with the Sleeping Beauty Transposon SystemZoltán Ivics, Zsuzsanna Izsvák — 2011
• Chromatin Landscapes of Retroviral and Transposon Integration ProfilesJohann de Jong, Waseem Akhtar, Jitendra Badhai — 2014
• Predicting preferential DNA vector insertion sites: implications for functional genomics and gene therapyChristopher S. Hackett, Aron M. Geurts, Perry B. Hackett — 2007
• PiggyBac transposon-mediated gene transfer in human cells.Matthew H. Wilson, Craig J. Coates, Alfred L. George — 2007
• Somatic Mutagenesis with a Sleeping Beauty Transposon System Leads to Solid Tumor Formation in ZebrafishMaura McGrail, Julia M. Hatler, Xianyan Kuang — 2011
• Retargeting sleeping beauty transposon insertions by engineered zinc finger DNA-binding domains.Katrin Voigt, Andreas Gogol‐Döring, Csaba Miskey — 2012
• Redirecting T-cell specificity by introducing a tumor-specific chimeric antigen receptor.Bipulendu Jena, Gianpietro Dotti, Laurence J.N. Cooper — 2010
• Nonviral gene therapy for age-related macular degenerationGabriele Thumann — 2011
• Sleeping beauty--a mouse model for all cancers?Viive M. Howell — 2012
• Structural Properties of Prokaryotic Promoter Regions Correlate with Functional FeaturesPieter Meysman, Julio Collado‐Vides, Enrique Morett — 2014
• Evaluating Risks of Insertional Mutagenesis by DNA Transposons in Gene TherapyPerry B. Hackett, David A. Largaespada, Kirsten C. Switzer — 2013
• DNA Structural Properties in the Classification of Genomic Transcription Regulation ElementsPieter Meysman, Kathleen Marchal, Kristof Engelen — 2012

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