Estimating the Relative Order of Speciation or Coalescence Events on a Given Phylogeny
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Summary
This paper derives fast algorithms for computing the probability that any given vertex in the tree was the j–th speciation event (for each j), and any one given vertex is earlier in the tree than a second given vertex.
- Type
- article
- Published
- 2006-01-01
- Cited by
- 13,415
- References
- 17
- Access
- Open access
- OpenAlex
- https://openalex.org/W2155430417
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:13513223
Keywords
Coalescent theory, Supertree, Vertex (graph theory), Phylogenetic tree, Combinatorics
References
- Estimation of the Branch Points of a Branching Diffusion Process
- Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today
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- Evolutionary models of phylogenetic trees
- Extinction and the loss of evolutionary history.
- Cladogenesis, coalescence and the evolution of the three domains of life.
- USING PHYLOGENETIC TREES TO STUDY SPECIATION AND EXTINCTION
- Phylogenetic inference based on matrix representation of trees.
- The probabilities of rooted tree-shapes generated by random bifurcation
- A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J. C. Willis, F.R.S.
- RANDOM DENDROGRAMS AND NULL HYPOTHESES IN CLADISTIC BIOGEOGRAPHY
- Probabilities of Evolutionary Trees
- Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene trees
- A Mathematical Theory of Evolution Based on the Conclusions of Dr. J. C. Willis, F.R.S.
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- Evaluation of genetic diversity in Magnaporthe grisea populations adapted to finger millet using simple sequence repeats (SSRs) markers
- Phylogeography of a species complex of lowland Neotropical rain forest trees (Carapa, Meliaceae)
- Phylogeography of two closely related anurans, the Relict Leopard Frog (Rana onca) and Lowland Leopard Frog (Rana yavapaiensis)
- Biotechnologies at work for smallholders: case studies from developing countries in crops, livestock and fish.
- Ecological speciation in Senecio lautus
- An investigation of the evolutionary diversification of a recent radiation of dwarf chameleons (Bradypodion) from KwaZulu-Natal Province, South Africa
- Scoring microsatellite loci.
- Phylogenetics of the genus sorghum, genetic diversity and nutritional value of its cultivated species
- Elucidating the Genetic Basis of Pigmentation Differences between Drosophila Species.
- Genetic diversity of feral populations of Nile tilapia (Oreochromis niloticus) in Thailand and evidence of genetic introgression.
- Diversidad genética en el Atlántico templado oriental: el caso de una angiosperma marina Zostera noltii
- An Apportionment of African Genetic Diversity Based on Mitochondrial, Y Chromosomal, and X Chromosomal Data
- Molecular Diversity After a Range Expansion in Heterogeneous Environments
- Wild and aquaculture populations of the eastern oyster compared using microsatellites.
- Testing dispersal hypotheses in foraging green sea turtles (Chelonia mydas) of Brazil.
- Genetic Diversity in Populations of Dalbulus maidis (DeLong and Wolcott) (Hemiptera: Cicadellidae) from Distant Localities in Brazil Assessed by RAPD-PCR Markers
- Microsatellite polymorphism within pfcrt provides evidence of continuing evolution of chloroquine-resistant alleles in Papua New Guinea
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