Stochastic Models for Speciation Events in Phylogenetic trees

Keywords

Coalescent theory, Genetic algorithm, Phylogenetic tree, Node (physics), Computational phylogenetics

References

• Estimation of the Branch Points of a Branching Diffusion ProcessA. W. F. Edwards — 1970
• Taschenbuch der MathematikI N Bronstein, K A Semendjajew — 1966
• Evolutionary models of phylogenetic treesIosif Pinelis — 2003
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• Distributions of cherries for two models of trees.Andy McKenzie, Mike Steel — 2000
• CRC Standard Mathematical Tables and FormulaeW. Beyer — 1991
• Phylogenetic inference based on matrix representation of trees.Mark A. Ragan — 1992
• Properties of phylogenetic trees generated by Yule-type speciation models.Mike Steel, Andy McKenzie — 2001
• The probabilities of rooted tree-shapes generated by random bifurcationEdith Harding — 1971
• A Mathematical Theory of Evolution, Based on the Conclusions of Dr. J. C. Willis, F.R.S.G. Udny Yule — 1925
• Probabilities of Evolutionary TreesJames K. M. Brown — 1994
• Stochastic speciation models for evolutionary trees.McKenzie, Andy — 2000
• Combining trees as a way of combining data sets for phylogenetic inference, and the desirability of combining gene treesBernard R. Baum — 1992
• Probabilities on cladograms: introduction to the alpha modelDaniel Ford — 2005

Cited by

• New Analytic Results for Speciation Times in Neutral ModelsTanja Gernhard — 2008
• Biodiversity conservation and evolutionary modelsKlaas Hartmann — 2008
• Macroevolutionary dynamics describing the tree of lifeO. Hagen — 2012
• Estimating Bayesian Phylogenetic Information ContentPaul O. Lewis, Ming‐Hui Chen, Lynn Kuo — 2016
• On the connections between the spatial Lambda-Fleming-Viot model and other processes for analysing geo-referenced genetic data.Johannes Wirtz, Stéphane Guindon — 2023
• Stochastic Properties of Generalised Yule Models, with Biodiversity ApplicationsTanja Gernhard, K. Hartmann, Mike Steel
• Estimating the Relative Order of Speciation or Coalescence Events on a Given PhylogenyTanja Gernhard, Daniel Ford, Rutger Vos — 2006

Related papers

• Properties of phylogenetic trees generated by Yule-type speciation models.Mike Steel, Andy McKenzie — 2001
• New Analytic Results for Speciation Times in Neutral ModelsTanja Gernhard — 2008
• On the distribution of interspecies correlation for Markov models of character evolution on Yule treesWillem H. Mulder, Forrest W. Crawford — 2014
• Markov mutation models on Yule trees: pairwise species comparisonsWillem H. Mulder, Forrest W. Crawford — 2014
• On the distribution of interspecies correlation for Markov mutation models on Yule treesWillem H. Mulder, Forrest W. Crawford — 2014
• Coalescent Time Distributions in Trees of Arbitrary SizeSam Efromovich, Laura Kubatko — 2008
• Diversity, disparity, and evolutionary rate estimation for unresolved Yule trees.Forrest W. Crawford, Marc A. Suchard — 2012
• Constraining prior probabilities of phylogenetic treesBengt Autzen — 2011