Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes
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- Type
- preprint
- Published
- 2014-06-18
- Cited by
- 10
- References
- 32
- Access
- Open access
- OpenAlex
- https://openalex.org/W1553205505
Keywords
Coalescent theory, Phylogenetic tree, Tree rearrangement, Computational phylogenetics, Tree (set theory)
References
- Some probabilistic and statistical problems in the analysis of DNA sequences
- Likelihood and Bayes estimation of ancestral population sizes in hominoids using data from multiple loci.
- The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models
- Construction of linear invariants in phylogenetic inference.
- Linear invariants under Jukes' and Cantor's one-parameter model.
- Quartet MaxCut: a fast algorithm for amalgamating quartet trees.
- A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
- Identifying the rooted species tree from the distribution of unrooted gene trees under the coalescent
- Evolutionary trees from DNA sequences: A maximum likelihood approach
- Bayesian Inference of Species Trees from Multilocus Data
- STEM: species tree estimation using maximum likelihood for gene trees under coalescence
- Bayesian Probabilities and Quartet Puzzling
- Quartet Inference from SNP Data Under the Coalescent Model
- A likelihood approach to estimating phylogeny from discrete morphological character data.
- A maximum pseudo-likelihood approach for estimating species trees under the coalescent model
- Identifiability of Two-Tree Mixtures for Group-Based Models
- Mechanized derivation of linear invariants.
- Species trees from gene trees: reconstructing Bayesian posterior distributions of a species phylogeny using estimated gene tree distributions.
- Identifiability of a Markovian model of molecular evolution with gamma-distributed rates
- Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences.
Cited by
- Likelihood-based tree reconstruction on a concatenation of aligned sequence data sets can be statistically inconsistent.
- Quartet Inference from SNP Data Under the Coalescent Model
- A comparative study of SVDquartets and other coalescent-based species tree estimation methods
- Concatenation Analyses in the Presence of Incomplete Lineage Sorting
- Phylogenomic Signatures of Ancient Introgression in a Rogue Lineage of Darters (Teleostei: Percidae)
- Identifiability of speciation times under the multispecies coalescent
- Taxonomic Uncertainty and the Anomaly Zone: Phylogenomics Disentangle a Rapid Radiation to Resolve Contentious Species (Gila robusta Complex) in the Colorado River
- Phylogeny, Biogeography, and Classification of the Elms (Ulmus)
- Population genomics of Monadenia (Gastropoda: Stylommatophora: Xanthonychidae) land snails reveals structuring but gene-flow across distinct species and morphotypes
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