Bayesian Inference of Species Trees from Multilocus Data
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Summary
It is demonstrated that both BEST and the new Bayesian Markov chain Monte Carlo method for the multispecies coalescent have much better estimation accuracy for species tree topology than concatenation, and the method outperforms BEST in divergence time and population size estimation.
- Type
- article
- Published
- 2009-11-11
- Cited by
- 2,457
- References
- 49
- Access
- Open access
- OpenAlex
- https://openalex.org/W2107608009
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:1021017
Keywords
Coalescent theory, Biology, Phylogenetic tree, Concatenation (mathematics), Evolutionary biology
References
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- Influences of past climatic changes on historical population structure and demography of a cosmopolitan marine predator, the common dolphin (genus Delphinus)
- Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia
- EVIDENCE FOR REPEATED LOSS OF SELECTIVE CONSTRAINT IN RHODOPSIN OF AMBLYOPSID CAVEFISHES (TELEOSTEI: AMBLYOPSIDAE)
- Biogeography and host‐related factors trump parasite life history: limited congruence among the genetic structures of specific ectoparasitic lice and their rodent hosts
- Flying rocks and flying clocks: disparity in fossil and molecular dates for birds
- Concatenation and Species Tree Methods Exhibit Statistically Indistinguishable Accuracy under a Range of Simulated Conditions
- Species-Level Phylogeny and Polyploid Relationships in Hordeum (Poaceae) Inferred by Next-Generation Sequencing and In Silico Cloning of Multiple Nuclear Loci
- Lactifluus volemus in Europe: Three species in one--Revealed by a multilocus genealogical approach, Bayesian species delimitation and morphology.
- Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis
- Phylogeny of the titi monkeys of the Callicebus moloch group (Pitheciidae, Primates)
- Species and hybrids in the genus Diaphanosoma Fischer, 1850 (Crustacea: Branchiopoda: Cladocera).
- Rooting phylogenetic trees under the coalescent model using site pattern probabilities
- Phylogenomics of a rapid radiation: the Australian rainbow skinks
- Polyphasic data support the splitting of Aspergillus candidus into two species; proposal of Aspergillus dobrogensis sp. nov.
- Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies
- Bayesian phylogenetic analysis of the influenza-A virus genomes isolated in Tunisia, and determination of potential recombination events.
- Bayesian Detection of Convergent Rate Changes of Conserved Noncoding Elements on Phylogenetic Trees
- Identifying model violations under the multispecies coalescent model using P2C2M.SNAPP
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