Complex sequence organization of heterochromatin in the holocentric plant Cuscuta europaea elucidated by the computational analysis of nanopore reads
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- Type
- article
- Published
- 2021-04-22
- Cited by
- 10
- References
- 51
- Access
- Open access
- OpenAlex
- https://openalex.org/W3158181217
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:234494544
Keywords
Heterochromatin, Biology, Constitutive heterochromatin, Retrotransposon, Genome
References
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- Molecular--cytogenetic characterization of the Vicia faba genome -- heterochromatin differentiation, replication patterns and sequence localization
- MUSCLE: a multiple sequence alignment method with reduced time and space complexity
- Improved pairwise alignment of genomic dna
- PlantSat: a specialized database for plant satellite repeats
- Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
- Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.
- A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.
- The holocentric species Luzula elegans shows interplay between centromere and large-scale genome organization.
- Targeting of human retrotransposon integration is directed by the specificity of the L1 endonuclease for regions of unusual DNA structure.
- Secondary structure formation and DNA instability at fragile site FRA16B
- Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin.
- The structures of mouse and human L1 elements reflect their insertion mechanism
- LINE-1 retrotransposons: from ‘parasite’ sequences to functional elements
- Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution[C][W]
- Evolutionary dynamics of microsatellite DNA
- De novo evolution of satellite DNA on the rye B chromosome.
- Molecular archeology of L1 insertions in the human genome
- Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice.
- SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.
Cited by
- Karyotype asymmetry in Cuscuta L. subgenus Pachystigma reflects its repeat DNA composition
- The Evolution of Cytogenetic Traits in Cuscuta (Convolvulaceae), the Genus With the Most Diverse Chromosomes in Angiosperms
- The role of repetitive DNA in re-patterning of major rDNA clusters in Lepidoptera
- Disruption of the standard kinetochore in holocentric Cuscuta species
- Satellite DNAs—From Localized to Highly Dispersed Genome Components
- The Role of Repetitive Sequences in Repatterning of Major Ribosomal DNA Clusters in Lepidoptera
- The structure, function, and evolution of plant centromeres
- Celine, a long interspersed nuclear element retrotransposon, colonizes in the centromeres of poplar chromosomes
- To Lump or to Split? Revision of Cuscuta Section Indecorae Using a Combined Morphometric, Phylogenetic, and Host Range Approach
- Eukaryotic Centromere Remodeling: Plasticity, Dynamics, and Holocentromere Formation
- Disruption of the standard kinetochore in holocentric Cuscuta species
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