Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
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Summary
With open-source implementations and cloud-deployable reproducible workflows, the bioBakery 3 platform can help researchers deepen the resolution, scale, and accuracy of multi-omic profiling for microbial community studies.
- Type
- preprint
- Published
- 2020-11-20
- Cited by
- 1,856
- References
- 167
- Access
- Open access
- OpenAlex
- https://openalex.org/W3099919742
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:227172483
Keywords
Metagenomics, Profiling (computer programming), Biology, Microbiome, Computational biology
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- Gut-resident microorganisms and their genes are associated with cognition and neuroanatomy in children
- Gut microbiota signatures are associated with toxicity to combined CTLA-4 and PD-1 blockade
- Experimental evaluation of ecological principles to understand and modulate the outcome of bacterial strain competition in gut microbiomes
- Overview of bioinformatic methods for analysis of antibiotic resistome from genome and metagenome data
- Accurate and sensitive detection of microbial eukaryotes from whole metagenome shotgun sequencing
- Gut microbial structural variations as determinants of human bile acid metabolism
- An Introduction to Next Generation Sequencing Bioinformatic Analysis in Gut Microbiome Studies
- Aspirin Modulation of the Colorectal Cancer-Associated Microbe Fusobacterium nucleatum
- Histopathology of laboratory-reared Nothobranchius fishes: Mycobacterial infections versus neoplastic lesions.
- Reference genome-independent taxonomic profiling of microbiomes with mOTUs3
- Patterns of transmission and horizontal gene transfer in the Dioscorea sansibarensis leaf symbiosis revealed by whole-genome sequencing.
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