tagHi-C Reveals 3D Chromatin Architecture Dynamics during Mouse Hematopoiesis.
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Summary
This study provides the tagHi-C method for studying the three-dimensional (3D) genome of a small number of cells and maps the comprehensive 3D chromatin landscape of bone marrow hematopoietic cells.
- Type
- article
- Published
- 2020-09-29
- Cited by
- 51
- References
- 59
- Access
- Open access
- OpenAlex
- https://openalex.org/W3091538767
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:222162010
Keywords
Chromatin, Haematopoiesis, Biology, ChIA-PET, Chromosome conformation capture
References
- CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- Chromatin state dynamics during blood formation
- Single cell Hi-C reveals cell-to-cell variability in chromosome structure
- Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
- A three-dimensional map of the human genome at kilobase resolution reveals principles of chromatin looping
- 3D genome reconstruction from chromosomal contacts
- Formation of mammalian erythrocytes: Chromatin condensation and enucleation
- Extensive Promoter-centered Chromatin Interactions Provide a Topological Basis for Transcription Regulation
- The new cytogenetics: blurring the boundaries with molecular biology
- Genome architecture: domain organization of interphase chromosomes.
- The role of formylated peptides and formyl peptide receptor 1 in governing neutrophil function during acute inflammation.
- Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions
- Organization of the mitotic chromosome
- Global Reorganization of the Nuclear Landscape in Senescent Cells
- Comprehensive mapping of long range interactions reveals folding principles of the human genome
- Gene ontology analysis for RNA-seq: accounting for selection bias
- The NHGRI GWAS Catalog, a curated resource of SNP-trait associations
- Transposition of native chromatin for multimodal regulatory analysis and personal epigenomics
- The polar arrangement of telomeres in interphase and meiosis. Rabl organization and the bouquet.
Cited by
- A Tumor Suppressor Enhancer of PTEN in T-cell development and leukemia
- dcHiC: differential compartment analysis of Hi-C datasets
- Application of Hi-C and other omics data analysis in human cancer and cell differentiation research
- CoolBox: a flexible toolkit for visual analysis of genomics data
- Dynamic Runx1 chromatin boundaries affect gene expression in hematopoietic development
- Deciphering the Complexity of 3D Chromatin Organization Driving Lymphopoiesis and Lymphoid Malignancies
- Genome Reorganization during Erythroid Differentiation
- Opportunity to improve livestock traits using 3D genomics.
- Seeing the forest through the trees: prioritising potentially functional interactions from Hi-C
- scGAD: single-cell gene associating domain scores for exploratory analysis of scHi-C data
- Interrogating cell type-specific cooperation of transcriptional regulators in 3D chromatin
- Microbial Single-Cell Analysis: What Can We Learn From Mammalian?
- Exogenous artificial DNA forms chromatin structure with active transcription in yeast
- HiCuT: An efficient and low input method to identify protein-directed chromatin interactions
- Dynamic 3D genome reorganization during development and metabolic stress of the porcine liver
- Nucleosome-Omics: A Perspective on the Epigenetic Code and 3D Genome Landscape
- CEBPA phase separation links transcriptional activity and 3D chromatin hubs.
- When 3D genome technology meets viral infection, including SARS‐CoV‐2
- Three-dimensional genome organization in immune cell fate and function
- Normalization and de-noising of single-cell Hi-C data with BandNorm and scVI-3D
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