Graph-Based Genome Alignment and Genotyping with HISAT2 and HISAT-genotype

Keywords

Genome, Genotyping, Computational biology, Reference genome, Haplotype

References

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• High Performance Computing: 6th Latin American Conference, CARLA 2019, Turrialba, Costa Rica, September 25–27, 2019, Revised Selected PapersShalf, John, Taufer, Michela, Yokota, Rio — 2020
• Deciphering the oncogenic network of PRC-2 loss guided leukemogenesisDavid J. Schneider, Jan‐Henning Klusmann, Dirk Heckl — 2016
• The impact of biological sex on alternative splicingGuy Karlebach, Diogo F. T. Veiga, Anne Deslattes Mays — 2018
• From command-line bioinformatics to bioGUIMarkus Joppich, Ralf Zimmer — 2018
• Reconstructing the transcriptional ontogeny of maize and sorghum supports an inverse hourglass model of inflorescence developmentSamuel Leiboff, Sarah Hake — 2019
• Testing implications of the polygenic model for the genetic analysis of loci identified through genome-wide associationWenyu Zhang, R. G. Reeves, Diethard Tautz — 2019
• Alignment and mapping methodology influence transcript abundance estimationAvi Srivastava, Laraib Malik, Hirak Sarkar — 2019
• Temozolomide-induced guanine mutations create exploitable vulnerabilities of guanine-rich DNA and RNA regions in drug-resistant gliomasDeanna Tiek, Beril Erdogdu, Roham Razaghi — 2019
• The little caterpillar that could – Tobacco Hornworm (Manduca sexta) caterpillars as a novel host model for the study of fungal virulence and drug efficacyNaomi Lyons, Isabel Softley, Andrew Balfour — 2019
• Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq dataAmit Blumberg, Yixin Zhao, Yi-Fei Huang — 2019
• Transcriptome assembly from long-read RNA-seq alignments with StringTie2Sam Kovaka, Aleksey V. Zimin, Geo Pertea — 2019
• Goodbye reference, hello genome graphsAdam Ameur — 2019
• Whole Genome Sequencing of the Giant Grouper (Epinephelus lanceolatus) and High-Throughput Screening of Putative Antimicrobial Peptide GenesDengdong Wang, Xiyang Chen, Xinhui Zhang — 2019
• ASlive: a database for alternative splicing atlas in livestock animalsJinding Liu, Suxu Tan, Shuiqing Huang — 2019
• Endogenous retroviruses are a source of oncogenic enhancers in acute myeloid leukemiaÖzgen Deniz, Mamataz Ahmed, Christopher D. Todd — 2019
• Reference transcriptome data in silkworm Bombyx moriKakeru Yokoi, Takuya Tsubota, Akiya Jouraku — 2019
• Generation of blastocyst-like structures from mouse embryonic and adult cell culturesRonghui Li, Cuiqing Zhong, Yang Yu — 2019
• High-resolution in vivo identification of miRNA targets by Halo-Enhanced Ago2 PulldownXiaoyi Li, Yuri Pritykin, Carla P. Concepcion — 2019
• Breakpoint refinement of genomic structural variation using split read analysisBalanur İçen — 2019

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