The Sequence Read Archive
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Summary
The content and structure of the SRA is presented, support for sequencing platforms and recommended data submission levels and formats are provided and the response to the challenge of data growth is outlined.
- Type
- article
- Published
- 2010-11-08
- Cited by
- 2,620
- References
- 11
- Access
- Open access
- OpenAlex
- https://openalex.org/W2116041602
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:13758564
Keywords
Data bank, Biology, DNA sequencing, Sequence (biology), Sequence database
References
- Improvements to services at the European Nucleotide Archive
- DDBJ launches a new archive database with analytical tools for next-generation sequence data
- The Sequence Alignment/Map format and SAMtools
- ZTR: a new format for DNA sequence trace data
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
- Archiving next generation sequencing data
- The International Nucleotide Sequence Database Collaboration
- Nucleic Acids Research
- Human genomes as email attachments
- Bioinformatics Applications Note Human Genomes as Email Attachments
Cited by
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- An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis
- Effects of subsampling on characteristics of RNA-seq data from triple-negative breast cancer patients
- Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars
- Gene co-expression analyses: an overview from microarray collections in Arabidopsis thaliana
- Integration of Telomere Length Dynamics into Systems Biology Framework: A Review
- A framework for space-efficient read clustering in metagenomic samples
- A Primer on Infectious Disease Bacterial Genomics
- Misidentification of genome assemblies in public databases: The case of Naumovozyma dairenensis and proposal of a protocol to correct misidentifications
- Method for the Identification of Taxon-Specific k-mers from Chloroplast Genome: A Case Study on Tomato Plant (Solanum lycopersicum)
- Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maize
- MicroRNA Expression Analysis of Naked Silkworms.
- DeepIsoFun: a deep domain adaptation approach to predict isoform functions
- Extremophile deep-sea viral communities from hydrothermal vents: Structural and functional analysis.
- MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect
- HVIDB: a comprehensive database for human-virus protein-protein interactions
- Mapping the human proteome using bioinformatic methods
- Giant viruses of the Kutch Desert
- Large Scale Read Classification forNext Generation Sequencing
- Computational analysis of regulatory mechanism and interactions of microRNAs
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