OrganellarGenomeDRAW (OGDRAW) version 1.3.1: expanded toolkit for the graphical visualization of organellar genomes
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Summary
A new version of OGDRAW equipped with a new front end that has now access to a local copy of the organelle genome database of the NCBI RefSeq project and enables the user to easily visualize large sets of organellar genomes spanning entire taxonomic clades.
- Type
- preprint
- Published
- 2019-02-10
- Cited by
- 2,102
- References
- 25
- Access
- Open access
- OpenAlex
- https://openalex.org/W2914270388
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:92417236
Keywords
GenBank, Genome, RefSeq, Visualization, Annotation
References
- Herbarium genomics: plastome sequence assembly from a range of herbarium specimens using an Iterative Organelle Genome Assembly pipeline
- Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984.
- OrganellarGenomeDRAW (OGDRAW): a tool for the easy generation of high-quality custom graphical maps of plastid and mitochondrial genomes
- MITOS: improved de novo metazoan mitochondrial genome annotation.
- Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
- Insights into the evolution of mitochondrial genome size from complete sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae).
- OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets
- The past, present and future of mitochondrial genomics: have we sequenced enough mtDNAs?
- CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences
- Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA
- MitoFish and MitoAnnotator: A Mitochondrial Genome Database of Fish with an Accurate and Automatic Annotation Pipeline
- GenomeVx: simple web-based creation of editable circular chromosome maps
- Automatic annotation of organellar genomes with DOGMA
- Mitochondrial genomics in Orthoptera using MOSAS
- The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression
- Plann: A command-line application for annotating plastome sequences
- Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes
- GeSeq – versatile and accurate annotation of organelle genomes
- AGORA: organellar genome annotation from the amino acid and nucleotide references
- GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
Cited by
- Structural and gene composition variation of the complete mitochondrial genome of Mammillaria huitzilopochtli (Cactaceae, Caryophyllales), revealed by de novo assembly
- Caught in action: fine-scale plastome evolution in the parasitic plants of Cuscuta section Ceratophorae (Convolvulaceae)
- The plastomes of Astrocaryum aculeatum G. Mey. and A. murumuru Mart. show a flip-flop recombination between two short inverted repeats
- Gene Loss and Evolution of the Plastome
- The rpl23 gene and pseudogene are hotspots of illegitimate recombination in barley chloroplast mutator seedlings
- Plastid Genomes of Five Species of Riverweeds (Podostemaceae): Structural Organization and Comparative Analysis in Malpighiales
- Phylogenetic analysis and characterization of the complete chloroplast genome of Dipsacus asperoides, the endemic medicinal herb in China
- Whole Plastome Sequences of Two Drug‐Type Cannabis: Insights Into the Use of Plastid in Forensic Analyses
- A CURE-based approach to teaching genomics using mitochondrial genomes
- The complete chloroplast genome of a medicinal resource plant (Rumex crispus)
- Characterization of the Complete Mitochondrial Genome of Harpalus sinicus and Its Implications for Phylogenetic Analyses
- Engineering microalgae through chloroplast transformation to produce high‐value industrial products
- Complete chloroplast genomes of 14 mangroves: phylogenetic and genomic comparative analyses
- Characterization of the complete chloroplast genome of black soybeans, Glycine max (L.) Merr. (legume)
- Complete sequence of wild Physalis philadelphica chloroplast genome
- Characterization of the complete chloroplast genome of a common Chinese medicinal herb, Eriocaulon buergerianum (Eriocaulaceae: Eriocaulon)
- Characterization of the complete chloroplast genome of Bletilla striata (Orchidaceae: Bletilla), the herb in China
- The complete chloroplast genome sequence of the medicinal plant Paeonia delavayi Franchet. (Paeoniaceae)
- Characterisation of the complete chloroplast genome of Gentiana delavayi Franch. (gentianaceae), a medicinal plant in southwest of China
- The complete chloroplast genome sequence of the medicinal plant Salvia yunnanensis C. H. Wright. (Lamiaceae)
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