HiGlass: web-based visual exploration and analysis of genome interaction maps
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- Type
- article
- Published
- 2017-03-31
- Cited by
- 1,944
- References
- 69
- Access
- Open access
- OpenAlex
- https://openalex.org/W2888425844
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:255989728
Keywords
Visualization, Interactive visualization, Computer science, Interface (matter), World Wide Web
References
- Two-dimensional segmentation for analyzing Hi-C data
- Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions
- HiCPlotter integrates genomic data with interaction matrices
- A three-dimensional map of the human genome at kilobase resolution reveals principles of chromatin looping
- Visualizing genomes: techniques and challenges
- A review of overview+detail, zooming, and focus+context interfaces
- The Effects of Interactive Latency on Exploratory Visual Analysis
- The Hitchhiker's Guide to Hi-C Analysis: Practical guidelines
- Integrative Genomics Viewer
- Visualization of omics data for systems biology
- Topological Domains in Mammalian Genomes Identified by Analysis of Chromatin Interactions
- Comprehensive mapping of long range interactions reveals folding principles of the human genome
- Exploring long-range genome interaction data using the WashU Epigenome Browser
- Iterative Correction of Hi-C Data Reveals Hallmarks of Chromosome Organization
- Identification of alternative topological domains in chromatin
- The human genome browser at UCSC.
- Spatial partitioning of the regulatory landscape of the X-inactivation center
- Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation
Cited by
- The 3D Genome Browser: a web-based browser for visualizing 3D genome organization and long-range chromatin interactions
- HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples
- Two independent modes of chromatin organization revealed by cohesin removal
- Removing unwanted variation between samples in Hi-C experiments
- Euplotid: A quantized geometric model of the eukaryotic cell
- Emerging Evidence of Chromosome Folding by Loop Extrusion
- Interpreting Chromosomal Rearrangements in the Context of 3-Dimentional Genome Organization: A Practical Guide for Medical Genetics
- Visual Pattern-Driven Exploration of Big Data
- Generation of Genome-wide Chromatin Conformation Capture Libraries from Tightly Staged Early Drosophila Embryos
- Communicating Genome Architecture: Biovisualization of the Genome, from Data Analysis and Hypothesis Generation to Communication and Learning.
- Hi-C detects novel structural variants in HL-60 and HL-60/S4 cell lines
- Hi-C analysis: from data generation to integration
- ChIA-PIPE: A fully automated pipeline for ChIA-PET data analysis and visualization
- Identifying cis elements for spatio-temporal control of mammalian DNA replication
- Cooler: scalable storage for Hi-C data and other genomically-labeled arrays
- Convergent genes shape budding yeast pericentromeres
- Resolving the 3D landscape of transcription-linked mammalian chromatin folding
- Migration through a small pore disrupts inactive chromatin organization in neutrophil-like cells
- WashU Epigenome Browser update 2019
- Kyrix: Interactive Pan/Zoom Visualizations at Scale
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