GLUE: a flexible software system for virus sequence data

Keywords

GenBank, Computer science, Scalability, Genome, Annotation

References

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Cited by

• The evolution, distribution and diversity of endogenous circoviral elements in vertebrate genomesTristan P. W. Dennis, William Marciel de Souza, Soledad Marsile-Medun — 2019
• Predicting the Effectiveness of Hepatitis C Virus Neutralizing Antibodies by Bioinformatic Analysis of Conserved Epitope Residues Using Public Sequence DataVanessa M. Cowton, Joshua B. Singer, Robert J. Gifford — 2018
• Coevolutionary history of ERVs and Perissodactyls inferred from the retroviral fossil recordHenan Zhu — 2018
• Interpreting Viral Deep Sequencing Data with GLUEJoshua B. Singer, Emma C. Thomson, Joseph Hughes — 2019
• Convalescent plasma therapy for persistent hepatitis E virus infectionMichael Ankcorn, Jennifer Gallacher, Samreen Ijaz — 2019
• Amino Acid Substitutions in Genotype 3a Hepatitis C Virus Polymerase Protein Affect Responses to SofosbuvirPeter A. C. Wing, Meleri Jones, Michelle Cheung — 2019
• Insights into Circovirus Host Range from the Genomic Fossil RecordTristan P. W. Dennis, Peter J. Flynn, William Marciel de Souza — 2018
• Public Health England HCV Resistance Group: overview and consensus recommendations for resistance testing in the management of chronic hepatitis C virus infection.Daniel Bradshaw, Jean L. Mbisa, Anna María Geretti — 2019
• Genome Sequence of an Unknown Subtype of Hepatitis C Virus Genotype 6: Another Piece for the Taxonomic PuzzleMartin Schou Pedersen, Sarah Mollerup, Lone Nielsen — 2019
• Rapid in-country sequencing of whole virus genomes to inform rabies elimination programmesKirstyn Brunker, Gurdeep Jaswant, Samuel M. Thumbi — 2020
• High-throughput sequencing (HTS) for the analysis of viral populations.Marcos Pérez‐Losada, Miguel Arenas, Juan Carlos Galán — 2020
• Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoproteinLenka Stejskal, William Lees, David S. Moss — 2020
• Evidence of tenofovir resistance in chronic hepatitis B virus (HBV) infection: An observational case series of South African adultsJolynne Mokaya, Tongai Maponga, Anna McNaughton — 2020
• A Phylodynamic Workflow to Rapidly Gain Insights into the Dispersal History and Dynamics of SARS-CoV-2 LineagesSimon Dellicour, Keith Durkin, Samuel L. Hong — 2020
• Empowering Virus Sequences Research through Conceptual ModelingAnna Bernasconi, Arif Canakoglu, Pietro Pinoli — 2020
• No evidence for distinct types in the evolution of SARS-CoV-2Oscar A. MacLean, Richard Orton, Joshua B. Singer — 2020
• Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus researchFranziska Hufsky, Kevin Lamkiewicz, Alexandre Almeida — 2020
• Betacoronavirus Genomes: How Genomic Information has been Used to Deal with Past Outbreaks and the COVID-19 PandemicAlejandro Llanes, Carlos M. Restrepo, Zuleima Caballero — 2020
• Update: proposed reference sequences for subtypes of hepatitis E virus (species Orthohepevirus A)Donald B. Smith, Jacques Izopet, Florence Nicot — 2020
• Presence of mismatches between diagnostic PCR assays and coronavirus SARS-CoV-2 genomeKashif Aziz Khan, Peter Pak‐Hang Cheung — 2020

Related papers

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• A Review of Annotation of the Pedagogic Colen CorpusXue Xue-yan — 2006