ViralZone: a knowledge resource to understand virus diversity

Keywords

Biology, Computational biology, Resource (disambiguation), Selection (genetic algorithm), Virus

References

• HDV RNA replication: ancient relic or primer?Thomas B. Macnaughton, M. M. C. Lai — 2006
• The Gene Ontology in 2010: extensions and refinementsThe Gene Ontology Consortium — 2009
• Marine viruses — major players in the global ecosystemCurtis A. Suttle — 2007
• Modification of mammalian reoviruses for use as oncolytic agentsDiana J.M. van den Wollenberg, S K van den Hengel, Iris J. C. Dautzenberg — 2009
• The 7th ICTV ReportC. Fauquet, M. A. Mayo — 2001
• Ebolavirus and Marburgvirus: insight the Filoviridae family.Paolo Ascenzi, Alessio Bocedi, J Heptonstall — 2008
• Porcine circoviruses--small but powerful.Tim Finsterbusch, Annette Mankertz — 2009
• On the Origin of Cells and Viruses: Primordial Virus World ScenarioEugene V. Koonin — 2009
• National Center for Biotechnology Information Viral Genomes ProjectYīmíng Bào, Scott Federhen, Detlef D. Leipe — 2004
• The origin of viruses and their possible roles in major evolutionary transitions.Patrick Forterre — 2006
• VIPERdb: a relational database for structural virologyCraig M. Shepherd — 2005
• New dimensions of the virus world discovered through metagenomicsDavid M. Kristensen, Arcady Mushegian, Valerian V. Dolja — 2009
• Herpes Virus ReplicationPaul E. Boehmer, Amitabh V. Nimonkar — 2003
• Virus taxonomy : eighth report of the International Committee on Taxonomy of VirusesC. M. Fauquet, M. A. Mayo, Jack Maniloff — 2005
• Viruses in the seaCurtis A. Suttle — 2005
• Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferencesIris Bahir, Menachem Fromer, Yosef Prat — 2009
• Gene Ontology: tool for the unification of biologyMichael Ashburner, Catherine A. Ball, Judith A. Blake — 2000
• Expression of animal virus genomes.David Baltimore — 1971
• The Last Universal Common Ancestor: emergence, constitution and genetic legacy of an elusive forerunnerNicolas Glansdorff, Ying Xu, Bernard Labedan — 2008
• OpenFluDB, a database for human and animal influenza virusRobin Liechti, Anne Gleizes, Dmitry Kuznetsov — 2010

Cited by

• Software Dedicated to Virus Sequence Analysis “Bioinformatics Goes Viral”Víctor Lorian — 2017
• New Targets for Zika Virus Determined by Human-Viral Interactomic: A Bioinformatics ApproachBeatriz J. Rizk — 2017
• Computational approaches in viral ecologyFidel Fita — 2020
• Retroviral mutagenesis in a newly developed myc transgenic mouse model of human B cell and plasma cell neoplasiaSamuel Lifton — 2013
• THE ANTIVIRAL ROLES OF ATG1 IN DROSOPHILA MELANOGASTER: IMMUNE RESPONSES AGAINST DROSOPHILA X VIRUSQian Wang — 2014
• Visualizing Viral Protein Structures in Cells Using Genetic Probes for Correlated Light and Electron MicroscopyHorng D. Ou, Thomas J. Deerinck, Eric A. Bushong — 2015
• IL-17 Modulation of Rhinovirus-Induced Allergic Airways DiseaseT. Peel — 2013
• Studies in viral population genetics and bioinformaticsKshitij Wagh — 2013
• [Ocular manifestations of Ebola virus disease: What we learned from the last epidemic].Antoine Rousseau, Marc Labétoulle — 2015
• Reengineering bacterial toxins into virus-like particlesJames F. Ross — 2013
• PhIN: A Protein Pharmacology Interaction Network DatabaseZhenhua Wang, J Li, Rui Dang — 2015
• Ebola virus disease: Getting to know a new emerging foe!Shrikala Baliga, M Shalini, Prasanna P Mithra — 2014
• Untangling the origin of viruses and their impact on cellular evolutionArshan Nasir, Fengjie Sun, Kyung Mo Kim — 2015
• Challenges associated with research on RNA viruses of insects.Jimena Carrillo-Tripp, Bryony C. Bonning, W. Allen Miller — 2015
• Mapping the Shapes of Phylogenetic Trees from Human and Zoonotic RNA VirusesArt F. Y. Poon, Lorne W. Walker, Heather Murray — 2013
• ViralZone: recent updates to the virus knowledge resourcePatrick Masson, Chantal Hulo, Edouard de Castro — 2012
• Collagen-Like Proteins in Pathogenic E. coli StrainsNeelanjana Ghosh, Thomas J. McKillop, Thomas A. Jowitt — 2012
• Intracellular Nucleic Acid Delivery by the Supercharged Dengue Virus Capsid ProteinJoão M. Freire, Ana Salomé Veiga, Thaís M. Conceição — 2013
• Microbial virus genome annotation - mustering the troops to fight the sequence onslaughtJ. Rodney Brister, Philippe Le Mercier, James C. Hu — 2012
• Exceptional virion release mechanism: one more surprise from archaeal viruses.David Prangishvili, Tessa E. F. Quax — 2011

Related papers

• Genomic relationships of N-genome Triticum speciesYang Yen, G. Kimber — 1992
• Identification of signals required for the insertion of heterologous genome segments into the reovirus genome.Michael R. Roner, Pai‐Cheng Lin, Igor Nepluev — 1995
• Estimating the size of the bacterial pan-genome.Pascal Lapierre, J. Peter Gogarten — 2009
• Differentiation and inter-genomic relationships among C, E and D genomes in the Oryzaofficinalis complex (Poaceae) as revealed by multicolor genomic in situ hybridizationCailing Li, D.-M. Zhang, S. Ge — 2001
• Analysis of Tandem Repeats Found in 44 Prokaryotic GenomesSatoshi Mizuta, Hikaru Munakata, Abulimiti Aimaiti — 2006
• Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolutionSampath Perumal, Nomar Espinosa Waminal, Jonghoon Lee — 2017
• Compositional Properties of Green-Plant Plastid GenomesJunko Kusumi, Hidenori Tachida — 2005