Population size may shape the accumulation of functional mutations following domestication
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Summary
The results confirm the classical population genetics theory prediction and highlight the important role of species’ Ne in shaping the patterns of accumulation of functional mutations, especially radical mutations, in domesticated animals.
- Type
- article
- Published
- 2018-01-19
- Cited by
- 20
- References
- 60
- Access
- Open access
- OpenAlex
- https://openalex.org/W2788703222
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:4721820
Keywords
Domestication, Biology, Nonsynonymous substitution, Effective population size, Population
References
- Pattern of polymorphism after strong artificial selection in a domestication event.
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- Domestication and the Mitochondrial Genome: Comparing Patterns and Rates of Molecular Evolution in Domesticated Mammals and Birds and Their Wild Relatives
- Establishing the validity of domestication genes using DNA from ancient chickens
- Phylogeny-aware alignment with PRANK.
- The Variation of Animals and Plants under Domestication: Frontmatter
- Conservation and the genetics of populations
- The neutral theory of molecular evolution
- Synonymous and nonsynonymous substitutions in mammalian genes and the nearly neutral theory
- Molecular consequences of animal breeding.
- More genes underwent positive selection in chimpanzee evolution than in human evolution
- A first-generation microsatellite-based genetic linkage map of the Siberian jay (Perisoreus infaustus): insights into avian genome evolution
- Core questions in domestication research
- Prehistoric genomes reveal the genetic foundation and cost of horse domestication
- The nonsynonymous/synonymous substitution rate ratio versus the radical/conservative replacement rate ratio in the evolution of mammalian genes.
- The neutral theory of molecular evolution.
- Population density and body size in mammals
- Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)
- Accumulation of Slightly Deleterious Mutations in the Mitochondrial Genome: a Hallmark of Animal Domestication
- The legacy of domestication: accumulation of deleterious mutations in the dog genome.
Cited by
- Selective constraints in cold‐region wild boars may defuse the effects of small effective population size on molecular evolution of mitogenomes
- Maladaptation in feral and domesticated animals
- Scalable Classification of Organisms into a Taxonomy Using Hierarchical Supervised Learners
- Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication
- Genomic, Transcriptomic and Epigenomic Tools to Study the Domestication of Plants and Animals: A Field Guide for Beginners
- Pervasive selection pressure in wild and domestic pigs
- Demographic history and genetic differentiation of an endemic and endangered Ulmus lamellosa (Ulmus)
- The de novo assembly of a European wild boar genome revealed unique patterns of chromosomal structural variations and segmental duplications
- Electronic Sports Sustainable Development of Probing into Digital Games, Teenage Domestication, and Mutual Construction
- The De Novo Genome Assembly of Olea europaea subsp. cuspidate, a Widely Distributed Olive Close Relative
- Simultaneous Inference of Past Demography and Selection from the Ancestral Recombination Graph under the Beta Coalescent
- Domestication affects sex-biased gene expression evolution in the duck
- Genetic diversity and selection signatures in Hainan black goats revealed by whole-genome sequencing data.
- Demographic inference from the mt-DNA COI gene and wing geometry of Culex gelidus (Diptera: Culicidae), an important vector of Japanese encephalitis in Thailand.
- Positive selection on rare variants of IGF1R and BRD4 underlying the cold adaptation of wild boar
- Evolutionary diversification of ancestral genes across vertebrates and insects
- Whole genome sequencing and resequencing provide insight into the genetic structure of wild Ophiocordyceps sinensis
- Genome resequencing revealed genetic differentiation and promoter variation in wax secretion genes among geographic populations of Ericerus pela
- Simultaneous Inference of Past Demography and Selection from the Ancestral Recombination Graph under the Beta Coalescent
- Whole genome resequencing of the Iranian native dogs and wolves to unravel variome during dog domestication
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