Analysis of single-cell genome sequences of bacteria and archaea
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Summary
This review describes single-cell genome analysis with a focus on the unique properties of single- cell sequence data and with emphasis on quality assessment and assurance.
- Type
- article
- Published
- 2017-11-14
- Cited by
- 15
- References
- 48
- Access
- Open access
- OpenAlex
- https://openalex.org/W2768151301
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:89788274
Keywords
DECIPHER, Archaea, Genome, Biology, Computational biology
References
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- Impact of library preparation protocols and template quantity on the metagenomic reconstruction of a mock microbial community
- Uncultivated thermophiles: current status and spotlight on 'Aigarchaeota'.
- The future is now: single-cell genomics of bacteria and archaea
- Assembling the Marine Metagenome, One Cell at a Time
- Single-cell genomics
- Dissecting biological “dark matter” with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth
- Impact of single-cell genomics and metagenomics on the emerging view of extremophile “microbial dark matter”
- Decontamination of MDA Reagents for Single Cell Whole Genome Amplification
- Cross-biome metagenomic analyses of soil microbial communities and their functional attributes
- IMG/M 4 version of the integrated metagenome comparative analysis system
- Single-Cell Genomics Reveals Organismal Interactions in Uncultivated Marine Protists
- Multiple displacement amplification compromises quantitative analysis of metagenomes
- Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton
- Hidden Diversity in Honey Bee Gut Symbionts Detected by Single-Cell Genomics
- Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus
- Single cell genomics: an individual look at microbes.
- Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets
- Genomic sequencing of uncultured microorganisms from single cells
- Genome-Wide Detection of Single Nucleotide and Copy Number Variations of a Single Human Cell
Cited by
- Integrating the whole from the sum of the parts: vignettes in computational biology.
- A community perspective on the concept of marine holobionts: current status, challenges, and future directions
- A community perspective on the concept of marine holobionts: state-of-the-art, challenges, and future directions
- Linking metagenomics to aquatic microbial ecology and biogeochemical cycles
- Bacterial dispersal and biogeography as underappreciated influences on phytobiomes.
- Dissecting the dominant hot spring microbial populations based on community-wide sampling at single-cell genomic resolution
- De novo assembly of human genome at single-cell levels
- Dual-Stable-Isotope-Probed Raman microspectroscopy reveals the metabolic dynamic of Streptococcus mutans.
- Metagenomic approaches for studying ubiquitous yet diverse nucleoid associated proteins in microbial communities: challenges and advances
- Wet‐lab preparation and automated dataset decontamination procedure for bacterial single‐cell genomics
- A community perspective on the concept of 1 marine holobionts: current status, challenges, 2 and future directions Marine holobionts from their origins to
- Genomes From Uncultivated Microorganisms
- A community perspective on the concept of 1 marine holobionts: current status, challenges, 2 and future directions 3
- A community perspective on the concept of 1 marine holobionts: current status, challenges, 2 and future directions 3
- A community perspective on the concept of 1 marine holobionts : state-ofthe-artcurrent status , 2 challenges , and future directions
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