RNA Sequencing and Co-expressed Long Non-coding RNA in Modern and Wild Wheats
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Summary
An important pool of transcripts is suggested where their manipulations confer a better performance of wheat varieties under drought stress, and several miRNA-lncRNA target pairs were detected as differentially expressed in drought stress.
- Type
- article
- Published
- 2017-09-06
- Cited by
- 81
- References
- 74
- Access
- Open access
- OpenAlex
- https://openalex.org/W2751612339
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:205599295
Keywords
Biology, Genome, Gene, Transcriptome, Genetics
References
- Plant Small RNAs: Biogenesis, Mode of Action and Their Roles in Abiotic Stresses
- Root precursors of microRNAs in wild emmer and modern wheats show major differences in response to drought stress
- Plant miRNAs: biogenesis, organization and origins
- Genome-wide screening for novel, drought stress-responsive long non-coding RNAs in drought-stressed leaf transcriptome of drought-tolerant and -susceptible banana (Musa spp) cultivars using Illumina high-throughput sequencing
- De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
- Long non-coding RNAs and their functions in plants.
- Harnessing NGS and Big Data Optimally: Comparison of miRNA Prediction from Assembled versus Non-assembled Sequencing Data—The Case of the Grass Aegilops tauschii Complex Genome
- Genome-wide identification of long noncoding RNA genes and their potential association with fecundity and virulence in rice brown planthopper, Nilaparvata lugens
- Identification of miRNAs associated with dark-induced senescence in Arabidopsis
- Genome sequencing and analysis of the model grass Brachypodium distachyon
- A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
- EMBOSS: the European Molecular Biology Open Software Suite.
- Characterization of miRNAs associated with Botrytis cinerea infection of tomato leaves
- Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics
- Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing
- Wheat homologs of yeast ATG6 function in autophagy and are implicated in powdery mildew immunity
- miRBase: integrating microRNA annotation and deep-sequencing data
- Thiamine modulates metabolism of the phenylpropanoid pathway leading to enhanced resistance to Plasmopara viticola in grapevine
- Sequencing over 13 000 expressed sequence tags from six subtractive cDNA libraries of wild and modern wheats following slow drought stress.
- The Sorghum bicolor genome and the diversification of grasses
Cited by
- Comparative metabolite profiling of drought stress in roots and leaves of seven Triticeae species
- A large-scale multiomics analysis of wheat stem solidness and the wheat stem sawfly feeding response, and syntenic associations in barley, Brachypodium, and rice
- Long non-coding RNAs in wild wheat progenitors
- Chromosome‐based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides
- Comparative Transcriptome Profiling Analysis of Red- and White-Fleshed Strawberry (Fragaria[REPLACEMENT CHARACTER]ananassa) Provides New Insight into the Regulation of the Anthocyanin Pathway
- Genome-wide screening of long non-coding RNAs involved in rubber biosynthesis in Eucommia ulmoides.
- Transcriptional regulation of osmotic stress tolerance in wheat (Triticum aestivum L.)
- Elevated carbon dioxide and drought modulate physiology and storage-root development in sweet potato by regulating microRNAs
- Multiple Regression Analysis Reveals MicroRNA Regulatory Networks in Oryza sativa under Drought Stress
- Detection of lncRNA-mRNA interaction modules by integrating eQTL with weighted gene co-expression network analysis
- Stress-responsive miRNAome of Glycine max (L.) Merrill: molecular insights and way forward
- Salinity-associated microRNAs and their potential roles in mediating salt tolerance in rice colonized by the endophytic root fungus Piriformospora indica
- Revealing the dominant long noncoding RNAs responding to the infection with Colletotrichum gloeosporioides in Hevea brasiliensis
- Recent advances in the characterization of plant transcriptomes in response to drought, salinity, heat, and cold stress
- Long noncoding RNAs and miRNAs regulating terpene and tartaric acid biosynthesis in rose‐scented geranium
- A new computational framework for the classification and function prediction of long non-coding RNAs
- RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat
- Transcriptome Analysis Implicates Involvement of Long Noncoding RNAs in Cytoplasmic Male Sterility and Fertility Restoration in Cotton
- Transcriptomic and evolutionary analysis of the mechanisms by which P. argentatum, a rubber producing perennial, responds to drought
- Systematic Characterization of Long Non-Coding RNAs and Their Responses to Drought Stress in Dongxiang Wild Rice
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