Genome sequencing and analysis of the model grass Brachypodium distachyon
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Summary
The high-quality genome sequence will help Brachypodium reach its potential as an important model system for developing new energy and food crops and establishes a template for analysis of the large genomes of economically important pooid grasses such as wheat.
- Type
- article
- Published
- 2010-02-11
- Cited by
- 1,748
- References
- 103
- Access
- Open access
- OpenAlex
- https://openalex.org/W1972171731
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:4367075
Keywords
Brachypodium distachyon, Brachypodium, Genome, Biology, Genomics
References
- Long, polymorphic microsatellites in simple organisms
- Evolutionary history of the grasses.
- Whole-genome sequence assembly for mammalian genomes: Arachne 2.
- Unique aspects of the grass cell wall.
- Applications of ultra-high-throughput sequencing.
- Breaking the Biological barriers to Cellulosic Ethanol: A Joint Research Agenda
- Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
- Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation.
- Genetics and geography of wild cereal domestication in the near east
- Loosening of plant cell walls by expansins
- Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions.
- Genome-Wide Profiling and Analysis of Arabidopsis siRNAs
- Variability, Recombination, and Mosaic Evolution of the Barley BARE-1 Retrotransposon
- Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize
- BAC 'landing' on chromosomes of Brachypodium distachyon for comparative genome alignment
- Engineering a software tool for gene structure prediction in higher organisms
- EMBOSS: the European Molecular Biology Open Software Suite.
- The FERONIA Receptor-like Kinase Mediates Male-Female Interactions During Pollen Tube Reception
- Agrobacterium-mediated transformation and inbred line development in the model grass Brachypodium distachyon
- Utility and distribution of conserved noncoding sequences in the grasses
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- The regulatory network of cell-cycle progression is fundamentally different in plants versus yeast or metazoans
- Physical mapping and BAC-end sequence analysis provide initial insights into the flax (Linum usitatissimum L.) genome
- Transcriptome-scale homoeolog-specific transcript assemblies of bread wheat
- The wheat HMW-glutenin 1Dy10 gene promoter controls endosperm expression in Brachypodium distachyon
- miR2118-triggered phased siRNAs are differentially expressed during the panicle development of wild and domesticated African rice species
- Comparative Analysis of WRKY Genes Potentially Involved in Salt Stress Responses in Triticum turgidum L. ssp. durum
- Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza
- Genome sequence of the progenitor of wheat A subgenome Triticum urartu
- Identification and Characterization of the EXO70 Gene Family in Polyploid Wheat and Related Species
- Fine mapping of the wheat powdery mildew resistance gene Pm52 using comparative genomics analysis and the Chinese Spring reference genomic sequence
- Genetic Variation for Seed Metabolite Levels in Brachypodium distachyon
- Genetic mechanisms of allopolyploid speciation through hybrid genome doubling: novel insights from wheat (Triticum and Aegilops) studies.
- Functional characterization of cinnamyl alcohol dehydrogenase and caffeic acid O-methyltransferase in Brachypodium distachyon
- The application of LTR retrotransposons as molecular markers in plants.
- Method development and application of Next Generation Sequencing in forward genetics
- SNP discovery by transcriptome pyrosequencing.
- Rhythmic Growth And Vascular Development In Brachypodium Distachyon
- Differential responses of Brachypodium distachyon genotypes to insect and fungal pathogens
- Genomic and Genetic Studies of Environmental Control of Brachypodium Growth and Development
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