Phased Diploid Genome Assembly with Single Molecule Real-Time Sequencing

Keywords

Ploidy, Genome, Biology, Genetics, Haplotype

References

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Cited by

• Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza淳一 藤田 — 2018
• The genome of Naegleria lovaniensis, the basis for a comparative approach to unravel pathogenicity factors of the human pathogenic amoeba N. fowleriRoger James Lee MacCulloch — 2018
• Iso-Seq Allows Genome-Independent Transcriptome Profiling of Grape Berry DevelopmentA. Edler, M M Hattingh, V P Servas — 2018
• Long-read based assembly and synteny analysis of a reference Drosophila subobscura genome reveals signatures of structural evolution driven by inversions recombination-suppression effectsGuy Marchessault — 2019
• A high-quality apple genome assembly reveals the association of a retrotransposon and red fruit colourPatricia Fernández-Labella — 2019
• Mikania micrantha genome provides insights into the molecular mechanism of rapid growth徳一 原島, 慎一 堀内 — 2020
• Initial Analysis of Structural Variation Detections in Cattle Using Long-Read Sequencing MethodsTsutomu Miyasato — 2022
• in silico Whole Genome Sequencer & Analyzer (iWGS): a computational pipeline to guide the design and analysis of de novo genome sequencing studiesXiaofan Zhou, David Peris, Jacek Kominek — 2015
• De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffoldsOlga Dudchenko, Sanjit Singh Batra, Arina D. Omer — 2016
• HINGE: long-read assembly achieves optimal repeat resolutionGovinda M. Kamath, Ilan Shomorony, Fei Xia — 2016
• Single-molecule sequencing and conformational capture enable de novo mammalian reference genomesDerek M. Bickhart, Benjamin D. Rosen, Sergey Koren — 2016
• High-Quality Assembly of an Individual of Yoruban DescentKaryn Meltz Steinberg, Tina Graves Lindsay, Valérie Schneider — 2016
• Evaluation of de novo assembly using PacBio long readsHuiwen Che — 2016
• SWALO: scaffolding with assembly likelihood optimizationAtif Rahman, Lior Pachter — 2016
• WhatsHap: fast and accurate read-based phasingMarcel Martin, Murray Patterson, Shilpa Garg — 2016
• Discovery and genotyping of structural variation from long-read haploid genome sequence dataJohn Huddleston, Mark Chaisson, Karyn Meltz Steinberg — 2017
• The dynamic three-dimensional organization of the diploid yeast genomeSeungsoo Kim, Ivan Liachko, Donna Garvey Brickner — 2016
• Assembly of long error-prone reads using de Bruijn graphsYu Lin, Jeffrey Yuan, Mikhail Kolmogorov — 2016
• HySA: a Hybrid Structural variant Assembly approach using next-generation and single-molecule sequencing technologiesXian Fan, Mark Chaisson, Luay Nakhleh — 2016
• Fast and accurate de novo genome assembly from long uncorrected readsRobert Vaser, Ivan Sović, Niranjan Nagarajan — 2016

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