A new DNA sequence assembly program.
Explore this paper's citation graph
Summary
The Genome Assembly Program (GAP), a new program for DNA sequence assembly, is described, which retains the useful components of the previous work, but includes many novel ideas and methods.
- Type
- article
- Published
- 1995-01-01
- Cited by
- 998
- References
- 7
- Access
- Open access
- OpenAlex
- https://openalex.org/W2073497058
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2910389
Keywords
Contig, Sequence assembly, Sequence (biology), Genome, Computer science
References
Cited by
- Genome DNA sequencing around the EF-1 alpha multigene locus of Arabidopsis thaliana indicates a high gene density and a shuffling of noncoding regions.
- Vaccinia virus strains Lister, USSR and Evans express soluble and cell-surface tumour necrosis factor receptors.
- A case for evolutionary genomics and the comprehensive examination of sequence biodiversity.
- The sequence of a 200 kb portion of a Plasmodium vivax chromosome reveals a high degree of conservation with Plasmodium falciparum chromosome 3.
- Calcitonin: characterisation and expression in a teleost fish, Fugu rubripes.
- Characterisation of a gene cluster in Fugu rubripes containing the complement component C4 gene.
- Comparative map between chicken Chromosome 15 and human chromosomal region 12q24 and 22q11-q12
- An investigation into the genetic diversity of the food-borne pathogen Campylobacter jejuni using DNA microarrays
- Genetic variation and recombination of RdRp and HSP 70h genes of Citrus tristeza virus isolates from orange trees showing symptoms of citrus sudden death disease
- Incremental steps toward incompatibility revealed by Arabidopsis epistatic interactions modulating salicylic acid pathway activation
- Genetic and forma specialis diversity in Blumeria graminis of cereals and its implications for host-pathogen co-evolution.
- Genetic evidence of multiple loci in dystocia - difficult labour
- High chloroplast haplotype diversity in the endemic legume Oxytropis chankaensis may result from independent polyploidization events
- Description, DNA barcoding and phylogenetic placement of a remarkable new species of Eopelma (Hymenoptera: Eupelmidae) from Borneo.
- Bioinformatics in Medical Practice: What is Necessary for a Hospital?
- Genome Sequence Assembly Using Trace Signals and Additional Sequence Information
- Genomic libraries: II. Subcloning, sequencing, and assembling large-insert genomic DNA clones.
- Ehrlichia ruminantium : genome assembly and analysis with the identification and testing of vaccine candidate genes
- Bioinformatic methods for eukaryotic RNA-Seq-based promoter identification
- Genomic biodiversity, phylogenetics and coevolution in proteins.
Related papers
- CAR: contig assembly of prokaryotic draft genomes using rearrangements
- Kermit: Guided Long Read Assembly using Coloured Overlap Graphs
- Whole-genome sequence assembly of the water buffalo (Bubalus bubalis)
- Genome Assembly.
- De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing
- Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information
- Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
- Efficient and highly continuous chromosome-level genome assembly of a diploid amniote genome