Partial recovery of microbiomes after antibiotic treatment
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Summary
It is suggested that while the taxonomical composition of microbiomes is partially affected by the antibiotic, the genomic content and population structure of bacterial communities is noticeably impacted.
- Type
- article
- Published
- 2016-08-05
- Cited by
- 57
- References
- 20
- Access
- Open access
- OpenAlex
- https://openalex.org/W2484995089
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:4007547
Keywords
Metagenomics, Microbiome, Biology, Antibiotics, Shotgun sequencing
References
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- MLST reveals potentially high-risk international clones of Enterobacter cloacae.
- The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
- The intrinsic resistome of bacterial pathogens
- Antibiotic overuse: Stop the killing of beneficial bacteria
- Strain-resolved community genomic analysis of gut microbial colonization in a premature infant
- Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
- Antibiotics in early life and obesity
- Estimating coverage in metagenomic data sets and why it matters
- Ecological effect of ceftazidime/avibactam on the normal human intestinal microbiota.
- Inter-individual differences in the gene content of human gut bacterial species
- The initial state of the human gut microbiome determines its reshaping by antibiotics
- Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations
- Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children
- Antibiotics in neonatal life increase murine susceptibility to experimental psoriasis
- Mash: fast genome and metagenome distance estimation using MinHash
- Genomic Characterization of Enterobacter cloacae Isolates from China That Coproduce KPC-3 and NDM-1 Carbapenemases
- Tracking Strains in the Microbiome: Insights from Metagenomics and Models
- Natural history of the infant gut microbiome and impact of antibiotic treatments on strain-level diversity and stability
- Ray Meta: scalable de novo metagenome assembly and profiling
Cited by
- Effects of Sepsis on Immune Response, Microbiome and Oxidative Metabolism in Preterm Infants
- Effect of antibiotics on bacterial populations: a multi-hierachical selection process
- Phenetic Comparison of Prokaryotic Genomes Using k-mers
- Characterization of Urinary Microbiome and Their Association with Health and Disease
- Response of extremophile microbiome to a rare rainfall reveals a two-step adaptation mechanism
- Antibiotics are associated with decreased progression-free survival of advanced melanoma patients treated with immune checkpoint inhibitors
- Culture-enriched human gut microbiomes reveal core and accessory resistance genes
- Synergistic and antagonistic interactions between antibiotics and synbiotics in modifying the murine fecal microbiome
- Halophilic microbial community compositional shift after a rare rainfall in the Atacama Desert
- The negative impact of antibiotics on outcomes in cancer patients treated with immunotherapy: a new independent prognostic factor?
- The Vulnerability of Microbial Ecosystems in a Changing Climate: Potential Impact in Shark Bay
- Human gut mobileome during antibiotic therapy. A trajectory-based approach to analysis of the metagenomic time-series datasets
- Measuring antibiotic levels and their relationship with the microbiome in chronic rhinosinusitis
- Long‐term impact of tylosin on fecal microbiota and fecal bile acids of healthy dogs
- Association of antibiotic exposure with survival and toxicity in patients with melanoma receiving immunotherapy.
- The Impact of Diet on Microbiota Evolution and Human Health. Is Diet an Adequate Tool for Microbiota Modulation?
- Metagenome-wide association analysis identifies microbial determinants of post-antibiotic ecological recovery in the gut
- Antimicrobial resistance in companion animal pathogens in Australia and assessment of pradofloxacin on the gut microbiota
- Oral antibiotics used in the treatment of chronic rhinosinusitis have limited penetration into the sinonasal mucosa: a randomized trial
- Role of the gut microbiome for cancer patients receiving immunotherapy: Dietary and treatment implications.
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