DADA2: High resolution sample inference from Illumina amplicon data
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Summary
The open-source software package DADA2 for modeling and correcting Illumina-sequenced amplicon errors is presented, revealing a diversity of previously undetected Lactobacillus crispatus variants.
- Type
- article
- Published
- 2016-05-23
- Cited by
- 30,007
- References
- 40
- OpenAlex
- https://openalex.org/W2401404581
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:18797375
Keywords
Amplicon, Computational biology, Biology, Sample (material), Computer science
References
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- Vaginal microbiome of reproductive-age women
- QIIME allows analysis of high-throughput community sequencing data
- ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences
- Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
- Fast, accurate error-correction of amplicon pyrosequences using Acacia
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- The vaginal microbiome during pregnancy and the postpartum period in a European population
- Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform
- Removing Noise From Pyrosequenced Amplicons
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- Effects of dependence in high-dimensional multiple testing problems
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- Gut Microbial Diversity in Women With Polycystic Ovary Syndrome Correlates With Hyperandrogenism
- The gut microbiome of nonhuman primates: Lessons in ecology and evolution
- Factors influencing bacterial microbiome composition in a wild non-human primate community in Taï National Park, Côte d’Ivoire
- Stochastic processes govern invasion success in microbial communities when the invader is phylogenetically close to resident bacteria
- Microbiome-assisted carrion preservation aids larval development in a burying beetle
- Ecological impact evaluation by constructing in situ microcosm with porous ceramic arrowhead.
- Urogenital schistosomiasis is associated with signatures of microbiome dysbiosis in Nigerian adolescents
- A different suite: The assemblage of distinct fungal communities in water-damaged units of a poorly-maintained public housing building
- Biotic filtering of endophytic fungal communities in Bromus tectorum
- Age-related analysis of the gut microbiome in a purebred dog colony.
- Living fabrication of functional semi-interpenetrating polymeric materials
- Metabolite Production in Alkanna tinctoria Links Plant Development with the Recruitment of Individual Members of Microbiome Thriving at the Root-Soil Interface
- Examining Different Analysis Protocols Targeting Hospital Sanitary Facility Microbiomes
- Long-Term Tillage and Crop Rotation Regimes Reshape Soil-Borne Oomycete Communities in Soybean, Corn, and Wheat Production Systems
- Shelf Life and Functional Quality of Almond Bagasse Powders as Influenced by Dehydration and Storing Conditions
- Lateral root enriched Massilia associated with plant flowering in maize
- Galacto-oligosaccharide preconditioning improves metabolic activity and engraftment of Limosilactobacillus reuteri and stimulates osteoblastogenesis ex vivo
- The Microbiome and Human Biology.
- Bayesian Nonparametric Ordination for the Analysis of Microbial Communities
- mockrobiota: a Public Resource for Microbiome Bioinformatics Benchmarking
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