Models for the a subunits of the Thermus thermophilus V/A-ATPase and Saccharomyces cerevisiae V-ATPase enzymes by cryo-EM and evolutionary covariance

Keywords

Thermus thermophilus, ATPase, Protein subunit, V-ATPase, Biology

References

• Electron cryomicroscopy observation of rotational states in a eukaryotic V-ATPaseJianhua Zhao, Samir Benlekbir, John L. Rubinstein — 2015
• Protein Structure Prediction Using RosettaCarol A. Rohl, Charlie E. M. Strauss, Kira M.S. Misura — 2004
• Mutations in ATP6N1B, encoding a new kidney vacuolar proton pump 116-kD subunit, cause recessive distal renal tubular acidosis with preserved hearingAnnabel N. Smith, Jennifer Skaug, Keith A. Choate — 2000
• STV1 gene encodes functional homologue of 95-kDa yeast vacuolar H(+)-ATPase subunit Vph1p.Morris F. Manolson, Bihua Wu, D. Proteau — 1994
• Mutations in the gene encoding B1 subunit of H+-ATPase cause renal tubular acidosis with sensorineural deafnessFiona E. Karet, Karin E. Finberg, Raoul D. Nelson — 1999
• A mechanism of proton translocation by F1F0 ATP synthases suggested by double mutants of the a subunit.Steven B. Vik, Barbara J. Antonio — 1994
• Interaction between Glu-219 and His-245 within the a subunit of F1F0-ATPase in Escherichia coli.Brian Cain, R D Simoni — 1988
• Defects in TCIRG1 subunit of the vacuolar proton pump are responsible for a subset of human autosomal recessive osteopetrosisAnnalisa Frattini, Paul J. Orchard, Cristina Sobacchi — 2000
• Description and comparison of algorithms for correcting anisotropic magnification in cryo-EM images.Jianhua Zhao, Marcus A. Brubaker, Samir Benlekbir — 2015
• Disassembly and reassembly of the yeast vacuolar H(+)-ATPase in vivo.Patricia M. Kane — 1995
• Alignment of cryo-EM movies of individual particles by optimization of image translations.John L. Rubinstein, Marcus A. Brubaker — 2014
• The Phyre2 web portal for protein modelling, prediction and analysisLawrence A. Kelley, Stefans Mezulis, Christopher M. Yates — 2015
• Function of a Subunit Isoforms of the V-ATPase in pH Homeostasis and in Vitro Invasion of MDA-MB231 Human Breast Cancer Cells*Ayana Hinton, Souad R. Sennoune, Sarah Bond — 2009
• Analysis of the Membrane Topology of Transmembrane Segments in the C-terminal Hydrophobic Domain of the Yeast Vacuolar ATPase Subunit a (Vph1p) by Chemical Modification*Yanru Wang, Masashi Toei, Michael Forgac — 2008
• Crystal structure of the cytoplasmic N-terminal domain of subunit I, a homolog of subunit a, of V-ATPaseSankaranarayanan Srinivasan, Nand K. Vyas, Matthew L. Baker — 2011
• Refinement of Protein Structures into Low-Resolution Density Maps using RosettaFrank DiMaio, Michael D. Tyka, Matthew L. Baker — 2009
• Transmembrane Topography of the 100-kDa a Subunit (Vph1p) of the Yeast Vacuolar Proton-translocating ATPase*Xing-Hong Leng, Tsuyoshi Nishi, Michael Forgac — 1999
• Osteoclastic bone resorption by a polarized vacuolar proton pump.Harry C. Blair, Steven L. Teitelbaum, Robert W. Ghiselli — 1989
• ATP synthase: an electrochemical transducer with rotatory mechanics.Wolfgang Junge, Holger Lill, Siegfried Engelbrecht — 1997
• Site-directed Mutagenesis of the 100-kDa Subunit (Vph1p) of the Yeast Vacuolar (H+)-ATPase*Xing-Hong Leng, Morris F. Manolson, Qing Liu — 1996

Cited by

• Cryo-EM studies of the structure and dynamics of vacuolar-type ATPasesMohammad T. Mazhab‐Jafari, John L. Rubinstein — 2016
• The changing landscape of membrane protein structural biology through developments in electron microscopyShaun Rawson, Simon P. Davies, Jonathan D. Lippiat — 2016
• Atomic model for the membrane-embedded VO motor of a eukaryotic V-ATPaseMohammad T. Mazhab‐Jafari, Alexis Rohou, Carla Schmidt — 2016
• Cryo-EM structures of the autoinhibited E. coli ATP synthase in three rotational statesMeghna Sobti, C. Smits, Andrew S. W. Wong — 2016
• Cryo-EM analysis of a domain antibody bound rotary ATPase complex.Roberta B. Davies, C. Smits, Andrew S. W. Wong — 2017
• Protein Structure Determination using Metagenome sequence dataSergey Ovchinnikov, Hahnbeom Park, Neha Varghese — 2017
• EM as a tool to study structure and function to guide inhibitor designS. Rawson — 2016
• Applications of contact predictions to structural biologyFelix Šimkovic, Sergey Ovchinnikov, David Baker — 2017
• Recent developments in the CCP-EM software suiteTom Burnley, Colin M. Palmer, Martyn Winn — 2017
• N‐linked glycosylation of a subunit isoforms is critical for vertebrate vacuolar H+‐ATPase (V‐ATPase) biosynthesisSally Esmail, Norbert Kartner, Yeqi Yao — 2018
• Dissociation and purification of the endogenous membrane-bound Vo complex from Pichia pastoris.Sumei Li, Tao Hong, Kun Wang — 2017
• Applications of sequence coevolution in membrane protein biochemistryJohn M. Nicoludis, Rachelle Gaudet — 2017
• Atomic model for the dimeric FO region of mitochondrial ATP synthaseHui Guo, Stephanie A. Bueler, John L. Rubinstein — 2017
• Molecular mechanisms of cutis laxa– and distal renal tubular acidosis–causing mutations in V-ATPase a subunits, ATP6V0A2 and ATP6V0A4Sally Esmail, Norbert Kartner, Yeqi Yao — 2018
• Bayesian inference of rotor ring stoichiometry from electron microscopy images of archaeal ATP synthase.Pilar Cossio, Matteo Allegretti, Florian Mayer — 2018
• Cryo-EM of ATP synthases.Hui Guo, John L. Rubinstein — 2018
• The Peripheral Stalk of Rotary ATPasesLilia Colina-Tenorio, Alain Dautant, Héctor Miranda‐Astudillo — 2018
• Off-axis rotor in Enterococcus hirae V-ATPase visualized by Zernike phase plate single-particle cryo-electron microscopyJun Tsunoda, Chihong Song, Fabiana Lica Imai — 2018
• Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilusAtsuko Nakanishi, Jun-ichi Kishikawa, Masatada Tamakoshi — 2018
• Insights into water accessible pathways and the inactivation mechanism of proton translocation by the membrane-embedded domain of V-type ATPases.Alexander Krah, Jan K. Marzinek, Peter J. Bond — 2019

Related papers

• Evidence of a subunit 4 (subunit b) dimer in favor of the proximity of ATP synthase complexes in yeast inner mitochondrial membrane.Christelle Spannagel, Jacques Vaillier, Geneviève Arselin — 1998
• Structure and function of the yeast vacuolar membrane proton ATPaseYasuhiro Anraku, Naoyuki Umemoto, Ryogo Hirata — 1989
• The peripheral stalk participates in the yeast ATP synthase dimerization independently of e and g subunits.Rémi Fronzes, Théodore Weimann, Jacques Vaillier — 2006
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• The F Subunit of Thermus thermophilus V1-ATPase Promotes ATPase Activity but Is Not Necessary for Rotation*Hiromi Imamura, C. Ikeda, Masasuke Yoshida — 2004
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• [Evolutonary modifications of molecular structure of ATP-synthase gamma-subunit].S. V. Ponomarenko — 2007
• ATP synthases from archaea: the beauty of a molecular motor.Gerhard Grüber, Malathy Sony Subramanian Manimekalai, Florian Mayer — 2014