WEGO: a web tool for plotting GO annotations

Jia Ye, Lin Fang, Hongkun Zheng, Yong Zhang, Jie Chen · Nucleic Acids Res. · 2006

Summary

WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO annotation results, designed to deal with the directed acyclic graph structure of GO to facilitate histogram creation of Go annotation results.

Type: article
Published: 2006-07-01
Cited by: 2,559
References: 19
Access: Open access
DOI: https://doi.org/10.1093/nar/gkl031
PubMed: https://pubmed.ncbi.nlm.nih.gov/16845012/
PMC: https://www.ncbi.nlm.nih.gov/pmc/articles/1538768/
OpenAlex: https://openalex.org/W2165463056
Semantic Scholar: https://api.semanticscholar.org/CorpusID:1913170

Keywords

Annotation, Genomics, Gene Annotation, Computer science, Genome project

References

Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resourceMidori A. Harris — 2004
GObar: A Gene Ontology based analysis and visualization tool for gene setsJason SM Lee, Gurpreet Katari, Ravi Sachidanandam — 2005
Creating the gene ontology resource: design and implementation.Judith A. Blake, John Corradi, Janan T. Eppig — 2001
The Genomes of Oryza sativa: A History of DuplicationsJun Yu, Jun Wang, Wei Lin — 2005
GOblet: a platform for Gene Ontology annotation of anonymous sequence dataDetlef Groth, Hans Lehrach, Steffen Hennig — 2004
OntoBlast function: from sequence similarities directly to potential functional annotations by ontology termsG. Zehetner — 2003
The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro.Evelyn Camon, Michele Magrane, Daniel Barrell — 2003
Gene Ontology: tool for the unification of biologyMichael Ashburner, Catherine A. Ball, Judith A. Blake — 2000
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene OntologyEvelyn Camon — 2004
GoFigure: Automated Gene OntologyTM annotationSalim Khan, Gang Situ, Keith Decker — 2003
GOToolBox: functional analysis of gene datasets based on Gene OntologyDavid Martin, Christine Brun, Élisabeth Rémy — 2004
GOTree Machine (GOTM): a web-based platform for interpreting sets of interesting genes using Gene Ontology hierarchiesBing Zhang, Denise D. Schmoyer, Stefan Kirov — 2004
Automated Gene Ontology annotation for anonymous sequence dataSteffen Hennig — 2003
A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)Jun Yu, Songnian Hu, Jun Wang — 2002
A Draft Sequence for the Genome of the Domesticated Silkworm (Bombyx mori)Biology analysis group, Qingyou Xia, Zeyang Zhou — 2004
GO: : TermFinder--open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genesElizabeth I. Boyle, Shuai Weng, Jeremy Gollub — 2004

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WEGO: a web tool for plotting GO annotations

Summary

Keywords

References

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