Transcriptome Sequencing and Development of Genic SSR Markers of an Endangered Chinese Endemic Genus Dipteronia Oliver (Aceraceae)
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Summary
The generation, de novo assembly and annotation of transcriptome datasets, and a large set of microsatellite or simple sequence repeat (SSR) markers derived from Dipteronia have been described, showing that products from 132 primer pairs were polymorphic, in which 97 polymorphic SSR markers were further selected to analyze the genetic diversity of 10 natural populations of Dipteronian.
- Type
- article
- Published
- 2016-02-23
- Cited by
- 30
- References
- 81
- Access
- Open access
- OpenAlex
- https://openalex.org/W26907245
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:16874456
Keywords
Computer science
References
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Cited by
- Comparative Transcriptome and Chloroplast Genome Analyses of Two Related Dipteronia Species
- De novo transcriptomic analysis and development of EST-SSRs for Sorbus pohuashanensis (Hance) Hedl.
- De novo transcriptome assembly of Zanthoxylum bungeanum using Illumina sequencing for evolutionary analysis and simple sequence repeat marker development
- Development of microsatellite markers for Myracrodruon urundeuva (F.F. & M.F. Allemão), a highly endangered species from tropical forest based on next-generation sequencing
- Mining and Development of Novel SSR Markers Using Next Generation Sequencing (NGS) Data in Plants
- De Novo Transcriptome Assembly and Population Genetic Analyses for an Endangered Chinese Endemic Acer miaotaiense (Aceraceae)
- Phylogenomics recovers monophyly and early Tertiary diversification of Dipteronia (Sapindaceae).
- Comparative transcriptomes and development of expressed sequence tag‐simple sequence repeat markers for two closely related oak species
- De novo assembly of transcriptomes, mining, and development of novel EST-SSR markers in Curcuma alismatifolia (Zingiberaceae family) through Illumina sequencing
- Discovery of novel genic-SSR markers from transcriptome dataset of an important non-human primate, Macaca fascicularis
- Development and evaluation of EST-SSR markers in Sorbus pohuashanensis (Hance) Hedl. and their application to other Sorbus species
- Single-Molecule Real-Time Sequencing of the Madhuca pasquieri (Dubard) Lam. Transcriptome Reveals the Diversity of Full-Length Transcripts
- Discovery of novel SSR markers from transcriptome data of Astronium fraxinifolium Schott, a threatened tree species in Brazil
- Detection and application of novel SSR markers from transcriptome data for Astronium fraxinifolium Schott, a threatened Brazilian tree species
- Transcriptome analysis of two Pogostemon cablin chemotypes reveals genes related to patchouli alcohol biosynthesis
- Tissue-specific transcriptome for Rheum tanguticum reveals candidate genes related to the anthraquinones biosynthesis
- Identification and characterization of genic simple sequence repeats from the leaf and stem transcriptomes of Stevia rebaudiana Bertoni
- Prediction of Potential Geographic Distribution of Endangered Relict Tree Species Dipteronia sinensis in China Based on MaxEnt and GIS
- Transcriptome Analysis and Identification of a Female-Specific SSR Marker in Pistacia chinensis Based on Illumina Paired-End RNA Sequencing
- Transcriptome profiles of yellowish-white and fuchsia colored flowers in the Rheum palmatum complex reveal genes related to color polymorphism
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