Java Treeview - extensible visualization of microarray data

Keywords

Java applet, Computer science, Java, Visualization, Open source

References

• Analysis of large-scale gene expression data.Gavin Sherlock — 2000
• AVA: visual analysis of gene expression microarray dataYihua Zhou, Jingdong Liu — 2003
• TRANSPATH: An integrated database on signal transduction and a tool for array analysisMathias Krull — 2003
• TableView: Portable Genomic Data VisualizationJames E. Johnson, Martina V. Strömvik, Kevin A.T. Silverstein — 2003
• J-Express: exploring gene expression data using JavaBjarte Dysvik, Inge Jonassen — 2001
• Open source clustering software.Michiel de Hoon, Seiya Imoto, Satoru Miyano — 2004
• Cluster analysis and display of genome-wide expression patterns.Michael B. Eisen, Paul T. Spellman, Patrick O. Brown — 1998
• Genesis: cluster analysis of microarray dataAlexander Sturn, John Quackenbush, Zlatko Trajanoski — 2002

Cited by

• Genomic fingerprinting of Burkholderia pseudomallei and B. mallei pathogens with DNA array based on interspecies sequence differences obtained by subtractive hybridization.Alexey A. Fushan, G.S. Monastyrskaya, Igor Abaev — 2006
• Inferring causal relationships among different histone modifications and gene expression.Sidney Douglas Engle — 2008
• Molecular processes underlying the floral transition in the soybean shoot apical meristemИванилова Татьяна Валерьевна — 2008
• Streptococcus pneumoniae nasopharyngeal colonization induces type I interferons and interferon-induced gene expressionN. M. Khaykinson — 2009
• Defining the functional network of epigenetic regulators in Arabidopsis thaliana.Rachel G. Miller — 2009
• Discovery and Annotation of Functional Chromatin Signatures in the Human GenomeF.H. Kistenkas, M.E.A. Kistenkas — 2009
• Profiling of mitochondrial transcriptome in germinating wheat embryos and seedlings subjected to cold, salinity and osmotic stresses.Nayden G. Naydenov, Sakina Khanam, Maryna Siniauskaya — 2010
• Discovery of commonly existing anode biofilm microbes in two different wastewater treatment MFCs using FLX Titanium pyrosequencingAmparo María Molina Martín — 2010
• DSIF and RNA Polymerase II CTD Phosphorylation Coordinate the Recruitment of Rpd3S to Actively Transcribed GenesHong-LiuQian, Xuan-XianPeng, Shou-HuiChen — 2010
• The maize ALDH protein superfamily: linking structural features to functional specificitiesJosh Hurewitz, André T. Jagendorf — 2010
• The First Insight into the Tissue Specific Taxus Transcriptome via Illumina Second Generation SequencingArlee V. Smith, W. J. Alford — 2011
• Analysis of Antimicrobial Resistance Genes Detected in Multiple-Drug-Resistant Escherichia coli Isolates from Broiler Chicken CarcassesSilvia Villarroya, Jiaxiang Zhou, Kristofer J. Thurecht — 2012
• Functional interactions between members of the REPAT family of insect pathogen‐induced proteinsLeigh Dawson — 2012
• Phage Display against Corneal Epithelial Cells Produced Bioactive Peptides That Inhibit Aspergillus Adhesion to the CorneasBertrand Fauré — 2012
• De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesisJochen Thies — 2012
• Transcriptomic Characterization of Temperature Stress Responses in Larval ZebrafishClaudio O. Cervino — 2012
• Microparticle conferred microRNA profiles - implications in the transfer and dominance of cancer traits芳幸 冨山 — 2012
• Comparison of WTC Dust Size on Macrophage Inflammatory Cytokine Release In vivo and In vitroA.M. Postel, R. Vreenegoor — 2012
• A forward genetics approach to identify molecular drivers of liver cancer using Sleeping Beauty mouse modelsJesse D. Riordan — 2013
• Gene Expression During Early Folliculogenesis in Goats Using Microarray Analysis1Gonzalo Molina — 2013

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