Inferring causal relationships among different histone modifications and gene expression.
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Summary
An automated inference method is used to build a Bayesian network to infer causal and combinatorial relationships among histone modifications and gene expression and identified many other relationships that may predict new epigenetic interactions important in epigenetic gene regulation.
- Type
- article
- Published
- 2008-08-01
- Cited by
- 136
- References
- 43
- Access
- Open access
- OpenAlex
- https://openalex.org/W18562678
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:31668551
Keywords
Legend, Focus (optics), History, Archaeology, Physics
References
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Cited by
- Detecting DNA-protein interactions in living cells--ChIP approach.
- An aging program at the systems level?
- Influence factors on the correlations between expression levels of neighboring pattern genes
- Bayesian Data Fusion of Gene Expression and Histone Modification Profiles for Inference of Gene Regulatory Network
- Histone modifications across the cell cycle in undifferentiated and differentiating mouse embryonic stem cells
- The organization, regulation and functions of genes in the pericentric heterochromatin of the Drosophila melanogaster third chromosome
- Identification of peculiar and common effects of histone modifications on transcription.
- Bioinformatics for Diagnosis, Prognosis and Treatment of Complex Diseases
- Análise da expressão de RNAs não-codificadores intrônicos em tumores de mama
- Epigenetic regulation of osteoclast differentiation
- Histone modifications involved in cassette exon inclusions: a quantitative and interpretable analysis
- Genome-Wide Analysis of Epigenetic Modifications
- Redistribution of H3K4me2 on neural tissue specific genes during mouse brain development
- Rule-based Models of Transcriptional Regulation and Complex Diseases : Applications and Development
- Application of machine learning methods to histone methylation ChIP-Seq data reveals H4R3me2 globally represses gene expression
- Epigenetic Programming of Blood Vessel Identity
- Global Quantitative Modeling of Chromatin Factor Interactions
- A Major Epigenetic Programming Mechanism Guided by piRNAs
- Computational inference of mRNA stability from histone modification and transcriptome profiles
- Integrating epigenetic prior in dynamic Bayesian network for gene regulatory network inference
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