Phylogenomics and the reconstruction of the tree of life
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Summary
This work has demonstrated the power of the phylogenomics approach, which has the potential to provide answers to several fundamental evolutionary questions, but challenges for the future have also been revealed.
- Type
- review
- Published
- 2005-05-01
- Cited by
- 1,210
- References
- 209
- Access
- Open access
- OpenAlex
- https://openalex.org/W2056568233
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:16379422
Keywords
Phylogenomics, Tree of life (biology), Phylogenetic tree, Biology, Phylogenetics
References
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- Use of Whole Genome Sequence Data To Infer Baculovirus Phylogeny
Cited by
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- Supertrees disentangle the chimerical origin of eukaryotic genomes.
- Uncovering rate variation of lateral gene transfer during bacterial genome evolution
- Elusive Origins of the Extra Genes in Aspergillus oryzae
- Whole-proteome phylogeny of prokaryotes by feature frequency profiles: An alignment-free method with optimal feature resolution
- On the artefactual parasitic eubacteria clan in conditioned logdet phylogenies: heterotachy and ortholog identification artefacts as explanations
- TreeFix: Statistically Informed Gene Tree Error Correction Using Species Trees
- The impact of automated filtering of BLAST-determined homologs in the phylogenetic detection of horizontal gene transfer from a transcriptome assembly.
- The salmon, the lungfish (or the coelacanth) and the cow: a revival?
- Higher-level phylogeny of paraneopteran insects inferred from mitochondrial genome sequences
- Application of multigene phylogenetics and site‐stripping to resolve intraordinal relationships in the Rhodymeniales (Rhodophyta)
- A New Orthology Assessment Method for Phylogenomic Data: Unrooted Phylogenetic Orthology.
- Resolution of deep eudicot phylogeny and their temporal diversification using nuclear genes from transcriptomic and genomic datasets.
- Alternative characterizations of Fitch’s xenology relation
- Helminth Infections and their Impact on Global Public Health
- Phylogenetic Bootstrapping under Resource Constraints: Higher Model Accuracy or more Replicates?
- Horizontal gene transfer between microbial eukaryotes.
- Graph-based methods for large-scale protein classification and orthology inference
- Reconciling gene family evolution and species evolution
- The evolution of the mitochondrial genomes of calcareous sponges and cnidarians
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