A uniform system for microRNA annotation.

Keywords

Biology, microRNA, Dicer, Computational biology, Gene

References

• The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegansBrenda J. Reinhart, Frank J. Slack, Michael Basson — 2000
• CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana.Wonkeun Park, Junjie Li, Rentao Song — 2002
• Prediction of plant microRNA targets.Matthew W. Rhoades, Brenda J. Reinhart, Lee P. Lim — 2002
• Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells.Yan Zeng, Eric J. Wagner, Bryan R. Cullen — 2002
• An Extensive Class of Small RNAs in Caenorhabditis elegansRosalind C. Lee, Victor Ambros — 2001
• Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure.David H. Mathews, Jeffrey Sabina, Michael Zuker — 1999
• Cleavage of Scarecrow-like mRNA Targets Directed by a Class of Arabidopsis miRNACésar Llave, Zhixin Xie, Kristin D. Kasschau — 2002
• miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs.Zissimos P. Mourelatos, Josée Dostie, Sergey Paushkin — 2002
• Where is the ?c?Harry J. Lipkin, H.R. Rubinstein, Nathan Isgur — 1978
• Numerous microRNPs in neuronal cells containing novel microRNAs.Josée Dostie, Zissimos P. Mourelatos, MICHAEL YANG — 2003
• Ancient Pathways Programmed by Small RNAsPhillip D. Zamore — 2002
• Endogenous and Silencing-Associated Small RNAs in Plants Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003210.César Llave, Kristin D. Kasschau, Maggie A. Rector — 2002
• The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14.Rosalind C. Lee, Rhonda Feinbaum, Victor Ambros — 1993
• The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation.Philip Olsen, Victor Ambros — 1999
• Identification of Novel Genes Coding for Small Expressed RNAsMariana Lagos‐Quintana, Reinhard Rauhut, Winfried Lendeckel — 2001
• Rfam: an RNA family databaseSam Griffiths‐Jones — 2003
• Control of developmental timing by micrornas and their targets.Amy E. Pasquinelli, Gary Ruvkun — 2002
• An Abundant Class of Tiny RNAs with Probable Regulatory Roles in Caenorhabditis elegansNelson C. Lau, Lee P. Lim, Earl G. Weinstein — 2001
• A microRNA array reveals extensive regulation of microRNAs during brain development.Anna M. Krichevsky, Kevin S. King, Christine P. Donahue — 2003
• MicroRNAs in plants.Brenda J. Reinhart, Earl G. Weinstein, Matthew W. Rhoades — 2002

Cited by

• Enhancing CHO cell productivity through the stable depletion of microRNA-23Paul Kelly — 2014
• Gene expression regulators —MicroRNAsFang Chen — 2005
• Ancient roles of non-coding RNAs in eukaryotic evolutionLotta Avesson — 2011
• MicroRNA genes are transcribed by RNA polymerase IIEdwin Arbey Hernández García, Diego Salazar, P. Melgarejo — 2004
• miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomesJoanne Wei Seen Teh — 2005
• The small RNA world of plants.新也 山中, 佳直 渋谷, 宏行 加納 — 2006
• Analyzing micro-RNA expression using microarrays.Timothy S. Davison, Charles D. Johnson, Bernard F. Andruss — 2006
• Abnormal microRNA-16 locus with synteny to human 13q14 linked to CLL in NZB mice.勝己 山岸, 幸一 金子 — 2007
• Translational Medicine: microRNAs: a new emerging class of players for disease diagnostics and gene therapyAlejandro Martínez Sierra — 2008
• Discovering microRNAs from Bombyx mori nucleopolyhedrosis virus.O. Landergard, K. Cavallin, G. Jönsson — 2010
• microRNA access to the target helicases from riceAlejandro Emilio Ramos Rodríguez — 2010
• The procollagen type III, alpha 1 (COL3A1) gene first intron expresses poly‐A+ RNA corresponding to multiple ESTs and putative miRNAsShigeru Nakao — 2011
• Functional, structural, and sequence studies of microRNA.Chanchal K. Mitra, Kalyani Korla — 2014
• microRNA Biogenesis and Function : An overview.健一 矢野 — 2011
• A Comprehensive Expression Profile of MicroRNAs in Porcine PituitaryJ. P. Willman, F. B. Morrison — 2011
• Plant Small RNAs: Biogenesis, Mode of Action and Their Roles in Abiotic StressesFranco Marzatico — 2011
• Exceptional stories of microRNAsAntoni Arrizabalaga i Blanch, Joan Sadurní i Picola, Jordi Pardo i Rodríguez — 2013
• miRNAs: small genes with big potential in metazoan phylogenetics.S.M.C. Nuyten, S.A. Gawronski — 2013
• Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencingWeb Administrator — 2014
• Guidelines for the Nomenclature of Genetic Elements in Tunicate Genomes牧夫 柏野 — 2014

Related papers

• AutomiG, a Biosensor to Detect Alterations in miRNA Biogenesis and in Small RNA Silencing Guided by Perfect Target ComplementarityClément Carré, Caroline Jacquier, Anne-Laure Bougé — 2013
• Dicer-independent, Ago2-mediated microRNA biogenesis in vertebratesJr-Shiuan Yang, Eric C. Lai — 2010
• Argonaute, Dicer, and Drosha are up-regulated along tumor progression in serous ovarian carcinoma.Olga Vaksman, Thea Eline Hetland, Claes G. Tropé — 2012
• Functional small RNAs are generated from select miRNA hairpin loops in flies and mammals.Katsutomo Okamura, Erik Ladewig, Li Zhou — 2013
• Molecular mechanisms of RNA interferenceRoss C. Wilson, Jennifer A. Doudna — 2013
• A Dicer-independent miRNA biogenesis pathway that requires Ago catalysisSihem Cheloufi, Camila O. dos Santos, Mark M. W. Chong — 2010
• A human snoRNA with microRNA-like functions.Christine Ender, Azra Krek, Marc R. Friedländer — 2008
• Diverse small non-coding RNAs in RNA interference pathways.Liande Li, Yi Liu — 2011
• Structural basis of microRNA length varietyJulia Staręga‐Rosłan, Jacek Król, Edyta Kościańska — 2010