Criteria for Annotation of Plant MicroRNAs
Explore this paper's citation graph
Summary
The specific criteria required for the annotation of plant miRNAs are updated, including experimental and computational data, as well as refinements to standard nomenclature.
- Type
- article
- Published
- 2008-12-01
- Cited by
- 1,199
- References
- 16
- Access
- Open access
- OpenAlex
- https://openalex.org/W2121673931
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:1624073
Keywords
Dicer, Biology, microRNA, Small RNA, Small nucleolar RNA
References
- Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions.
- Global identification of microRNA–target RNA pairs by parallel analysis of RNA ends
- Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
- Cleavage of Scarecrow-like mRNA Targets Directed by a Class of Arabidopsis miRNA
- A two-hit trigger for siRNA biogenesis in plants.
- A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development
- miRBase: tools for microRNA genomics
- The heterochronic maize mutant Corngrass1 results from overexpression of a tandem microRNA
- A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana.
- A uniform system for microRNA annotation.
- Target mimicry provides a new mechanism for regulation of microRNA activity
- Regulation of Flowering Time and Floral Organ Identity by a MicroRNA and Its APETALA2-Like Target Genes Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.016238.
- Sequence and expression differences underlie functional specialization of Arabidopsis microRNAs miR159 and miR319.
- Evolution of microRNA genes by inverted duplication of target gene sequences in Arabidopsis thaliana
- A MicroRNA as a Translational Repressor of APETALA 2 in Arabidopsis Flower Development
- Criteria for Annotation of Plant Micrornas
Cited by
- Identification of Nutrient-Responsive Arabidopsis and Rapeseed MicroRNAs by Comprehensive Real-Time Polymerase Chain Reaction Profiling and Small RNA Sequencing1[C][W][OA]
- Stars and Symbiosis: MicroRNA- and MicroRNA*-Mediated Transcript Cleavage Involved in Arbuscular Mycorrhizal Symbiosis1[W][OA]
- Plant Small RNAs: Biogenesis, Mode of Action and Their Roles in Abiotic Stresses
- miRNAs: small genes with big potential in metazoan phylogenetics.
- Identification of miRNAs and their target genes in developing maize ears by combined small RNA and degradome sequencing
- Novel MiRNA and PhasiRNA Biogenesis Networks in Soybean Roots from Two Sister Lines That Are Resistant and Susceptible to SCN Race 4
- Comparative Profiling of miRNAs and Target Gene Identification in Distant-Grafting between Tomato and Lycium (Goji Berry)
- Discovery of MicroRNAs and Their Target Genes Related to Drought in Paulownia “Yuza 1” by High-Throughput Sequencing
- MicroRNA annotation in plants: current status and challenges
- Overview of plant RNAi.
- Effects of microRNA156 on Flowering Time and Plant Architecture in Medicago sativa
- Identificação e análise de expressão de microRNAS em soja sob estresse biótico e abiótico
- Cytonuclear and small RNA evolution in diploid and polyploid plant species
- Genome-wide identification of microRNAs associated with taproot development in radish (Raphanus sativus L.).
- Identification and Characterization of MicroRNAs in Ginkgo biloba var. epiphylla Mak
- Small RNA and degradome sequencing reveals microRNAs and their targets involved in tomato pedicel abscission
- Non-cell-autonomous RNA Silencing Spread in Plants
- Identification by deep sequencing and profiling of conserved and novel hickory microRNAs involved in the graft process
- High-throughput sequencing-based genome-wide identification of microRNAs expressed in developing cotton seeds
- Identification and characterization of microRNA expression in Ginkgo biloba L. leaves
Related papers
- Structural insights into RNA Processing by the Human RISC-Loading Complex
- Intertwined pathways for Argonaute-mediated microRNA biogenesis in Drosophila
- Evolutionary conservation of a unique amino acid sequence in human DICER protein essential for binding to Argonaute family proteins.
- Homeostatic control of Argonaute stability by microRNA availability
- AutomiG, a Biosensor to Detect Alterations in miRNA Biogenesis and in Small RNA Silencing Guided by Perfect Target Complementarity
- Dicer and Argonaute Genes Involved in RNA Interference in the Entomopathogenic Fungus Metarhizium robertsii
- Reduced Expression of Argonaute 1, Argonaute 2, and TRBP Changes Levels and Intracellular Distribution of RNAi Factors
- Roles of Argonaute Proteins in RNA Interference
- Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain
- Hairpin dsRNA does not trigger RNA interference in Candida albicans cells