R/qtl: QTL Mapping in Experimental Crosses
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Summary
R/qtl is an extensible, interactive environment for mapping quantitative trait loci (QTLs) in experimental populations derived from inbred lines and includes functions for estimating genetic maps, identifying genotyping errors, and performing single-QTL and two-dimensional, two- QTL genome scans by multiple methods.
- Type
- article
- Published
- 2003-05-01
- Cited by
- 3,362
- References
- 12
- Access
- Open access
- OpenAlex
- https://openalex.org/W2116053845
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:2102099
Keywords
Quantitative trait locus, Family-based QTL mapping, R package, Inclusive composite interval mapping, Genotyping
References
- Multiple interval mapping for quantitative trait loci.
- Gentleman R: R: A language for data analysis and graphics
- Concordance of murine quantitative trait loci for salt-induced hypertension with rat and human loci.
- Map Manager QTX, cross-platform software for genetic mapping
- A simple regression method for mapping quantitative trait loci in line crosses using flanking markers
- Maximum likelihood from incomplete data via the EM - algorithm plus discussions on the paper
- MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations.
- A Maximization Technique Occurring in the Statistical Analysis of Probabilistic Functions of Markov Chains
- Empirical threshold values for quantitative trait mapping.
- A statistical framework for quantitative trait mapping.
- Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.
- Multiple Interval Mapping
Cited by
- Genetic analysis of autoimmune and metabolic traits in chickens
- Genetic Control of X Chromosome Inactivation in Mice: Definition of the Xce Candidate Interval
- Distinct loci influence radiation-induced alveolitis from fibrosing alveolitis in the mouse.
- Rgcs1, a dominant QTL that affects retinal ganglion cell death after optic nerve crush in mice
- QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines
- Single Nucleotide Polymorphisms Affect both Cis- and Trans-eQTLs
- Mapping an overdominant quantitative trait locus for heterosis of body weight in mice.
- Quantitative trait locus analysis using J/qtl.
- Multigenic Control and Sex Bias in Host Susceptibility to Spore-Induced Pulmonary Anthrax in Mice
- QTL mapping of the production of wine aroma compounds by yeast
- Mapping of pigmentation QTL on an anchored genome assembly of the cichlid fish, Metriaclima zebra
- Genetic background (DDD/Sgn versus C57BL/6J) strongly influences postnatal growth of male mice carrying the Ay allele at the agouti locus: identification of quantitative trait loci associated with diabetes and body weight loss
- Genetic mapping of two components of reproductive isolation between two sibling species of moths, Ostrinia nubilalis and O. scapulalis
- Molecular Identification of Collagen 17a1 as a Major Genetic Modifier of Laminin Gamma 2 Mutation-Induced Junctional Epidermolysis Bullosa in Mice
- Genetic Analysis of Ligation-Induced Neointima Formation in an F2 Intercross of C57BL/6 and FVB/N Inbred Mouse Strains
- Arabidopsis Seed Content QTL Mapping Using High-Throughput Phenotyping: The Assets of Near Infrared Spectroscopy
- Dissection of Genetic Factors underlying Wheat Kernel Shape and Size in an Elite × Nonadapted Cross using a High Density SNP Linkage Map
- Systems Genetics of Liver Fibrosis.
- A second generation SNP and SSR integrated linkage map and QTL mapping for the Chinese mitten crab Eriocheir sinensis
- Clubroot resistance QTL are modulated by nitrogen input in Brassica napus
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