ZTR: a new format for DNA sequence trace data
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Summary
An extensible file format for DNA trace data which produces compact files suitable for large-scale storage and efficient use of internet bandwidth is created, named ZTR.
- Type
- article
- Published
- 2002-01-01
- Cited by
- 31
- References
- 20
- Access
- Open access
- OpenAlex
- https://openalex.org/W2115242653
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:15127403
Keywords
File Transfer Protocol, TRACE (psycholinguistics), Computer science, The Internet, Database
References
- Base-calling of automated sequencer traces using phred. I. Accuracy assessment.
- ZLIB Compressed Data Format Specification version 3.3
- DNA sequence chromatogram browsing using JAVA and CORBA.
- PNG (Portable Network Graphics) Specification Version 1.0
- PCR-SSCP: a simple and sensitive method for detection of mutations in the genomic DNA.
- The application of numerical estimates of base calling accuracy to DNA sequencing projects.
- A method for the construction of minimum-redundancy codes
- Trev: a DNA trace editor and viewer
- Sequence assembly with CAFTOOLS.
- Base-calling of automated sequencer traces using phred. II. Error probabilities.
- Unbounded length contexts for PPM
- A Block-sorting Lossless Data Compression Algorithm
- A standard file format for data from DNA sequencing instruments.
- The Staden package, 1998.
- Nomenclature Committee for the International Union of Biochemistry (NC-IUB). Nomenclature for incompletely specified bases in nucleic acid sequences. Recommendations 1984.
- Arithmetic Coding
- Arithmetic Coding
Cited by
- Supervised DAG Based Data Mining Model for DNA Sequence Analysis and Pattern Discovery
- GENtle, a free multi-purpose molecular biology tool
- Towards Multi-site Metadata Management for Geographically Distributed Cloud Workflows
- MEAN FIELD MODEL OF THE GENETIC TOGGLE SWITCH
- SeqTrace: a graphical tool for rapidly processing DNA sequencing chromatograms.
- Compressive biological sequence analysis and archival in the era of high-throughput sequencing technologies
- A Novel Scalable Architecture of Cloud Storage System for Small Files Based on P2P
- Efficient frequent sequence mining by a dynamic strategy switching algorithm
- An optimized approach for storing and accessing small files on cloud storage
- Trev: a DNA trace editor and viewer
- Small Files Problem in Parallel File System
- Improving metadata management for small files in HDFS
- The Sequence Read Archive
- An efficient algorithm for mining frequent sequences by a new strategy without support counting
- Small-file access in parallel file systems
- Effective Mining Sequential Pattern by Last Position Induction
- A small file performance optimization algorithm on P2P distributed file system
- Optimization Scheme for Small Files Storage Based on Hadoop Distributed File System
- [Phylogenetic relationship among some groups of orthopteran based on complete sequences of the mitochondrial COI gene].
- The complete mitochondrial genomes of Xyleutes mineus and Zeuzera multistrigata (Cossidae: Zeuzerinae): genome characterisation and phylogenetic implications
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