STRING 8—a global view on proteins and their functional interactions in 630 organisms
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Summary
The most important new developments in STRING 8 over previous releases include a URL-based programming interface, improved interaction prediction via genomic neighborhood in prokaryotes, and the inclusion of protein structures.
- Type
- article
- Published
- 2008-10-21
- Cited by
- 2,565
- References
- 38
- Access
- Open access
- OpenAlex
- https://openalex.org/W2113613985
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:6311275
Keywords
String (physics), Biology, Computational biology, Annotation, Genome
References
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- NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways
- Predicting biological networks from genomic data
- Towards zoomable multidimensional maps of the cell
- Interaction networks for systems biology
- MINT: the Molecular INTeraction database
- Mendelian Inheritance in Man
- A more complete, complexed and structured interactome.
- Systems-level insights into cellular regulation: inferring, analysing, and modelling intracellular networks.
- Dynamic Complex Formation During the Yeast Cell Cycle
- IntAct—open source resource for molecular interaction data
- EcoCyc: a comprehensive database resource for Escherichia coli
- Walking the interactome for prioritization of candidate disease genes.
- KEGG for linking genomes to life and the environment
- STRING: known and predicted protein–protein associations, integrated and transferred across organisms
- Expanded protein information at SGD: new pages and proteome browser
- The Database of Interacting Proteins: 2004 update
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- Deciphering Membrane-Associated Molecular Processes in Target Tissue of Autoimmune Uveitis by Label-Free Quantitative Mass Spectrometry*
- MLTreeMap - accurate Maximum Likelihood placement of environmental DNA sequences into taxonomic and functional reference phylogenies
- The Proximal Signaling Network of the BCR-ABL1 Oncogene Shows a Modular Organization
- The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer.
- Integration of genetic and immunological insights into a model of celiac disease pathogenesis.
- Experimental and computational approaches for the study of calmodulin interactions.
- Genome-wide RNAi screens identify genes required for Ricin and PE intoxications.
- Large-scale De Novo Prediction of Physical Protein-Protein Association*
- DENSE: efficient and prior knowledge-driven discovery of phenotype-associated protein functional modules
- Love me tender: an Omics window on the bovine meat tenderness network.
- Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress
- Osteoprotegerin in Exosome-Like Vesicles from Human Cultured Tubular Cells and Urine
- miRror-Suite: decoding coordinated regulation by microRNAs
- Proteogenomic convergence for understanding cancer pathways and networks
- Proceedings of the Thirteenth Annual UT- KBRIN Bioinformatics Summit 2014
- A Hybrid Computational Method for the Discovery of Novel Reproduction-Related Genes
- Methylation-Associated Partial Down-Regulation of Mesothelin Causes Resistance to Anti-Mesothelin Immunotoxins in a Pancreatic Cancer Cell Line
- Analysis of molecular pathways in pancreatic ductal adenocarcinomas with a bioinformatics approach.
- Maximum flow approach to prioritize potential drug targets of Mycobacterium tuberculosis H37Rv from protein-protein interaction network
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