IntAct—open source resource for molecular interaction data

Keywords

Suite, Software, Open source, Source code, Data curation

References

• The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queriesRichard G. Côté, Philip Jones, Rolf Apweiler — 2006
• Unraveling protein interaction networks with near-optimal efficiencyMichael Lappé, Liisa Holm — 2004
• The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction dataHenning Hermjakob, Luisa Montecchi‐Palazzi, Gary D. Bader — 2004
• The minimum information required for reporting a molecular interaction experiment (MIMIx)Sandra Orchard, Łukasz Salwiński, Samuel Kerrien — 2007
• MINT: the Molecular INTeraction databaseAndrew Chatr‐aryamontri, Arnaud Céol, Luisa Montecchi Palazzi — 2006
• A Protein Interaction Map of Drosophila melanogasterLoïc Giot, Joel S. Bader, Cory Brouwer — 2003
• InterPro, progress and status in 2005Nicola Mulder — 2004
• The Database of Interacting Proteins: 2004 updateŁukasz Salwiński — 2004
• ProViz: protein interaction visualization and explorationFlorian Iragne, Macha Nikolski, Bertrand Mathieu — 2005
• The Molecular Biology Database Collection: 2005 updateMichael Y. Galperin — 2004
• EMBL Nucleotide Sequence Database: developments in 2005Guy Cochrane — 2005
• Reactome: a knowledgebase of biological pathwaysG. Joshi-Tope — 2004
• MPact: the MIPS protein interaction resource on yeastUlrich Güldener — 2005
• The Biomolecular Interaction Network Database and related tools 2005 updateCris Alfarano — 2004
• UniProt: the Universal Protein knowledgebaseRolf Apweiler — 2004
• IntAct: an open source molecular interaction databaseHenning Hermjakob — 2004
• Cytoscape: a software environment for integrated models of biomolecular interaction networks.Paul Shannon, Andrew Markiel, Owen Ozier — 2003
• The Molecular Biology Database Collection: 2006 updateMichael Y. Galperin — 2005
• The Gene Ontology (GO) project in 2006Gene Ontology Consortium — 2005

Cited by

• Comparison of Three Preprocessing Filters Efficiency in Virtual Screening: Identification of New Putative LXRβ Regulators As a Test CaseLéo Ghemtio, Marie‐Dominique Devignes, Malika Smaïl‐Tabbone — 2010
• The Proximal Signaling Network of the BCR-ABL1 Oncogene Shows a Modular Organization裕美子 辻, ふじ子 近喰, まり 川田 — 2010
• The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer.Lesley J.M. Scopes, John Woollard — 2011
• Inhibition of pyrimidine synthesis reverses viral virulence factor-mediated block of mRNA nuclear exportJesús Díaz Vivas — 2012
• Augmented transitive relationships with high impact protein distillation in protein interaction prediction.José Alfredo Vicente Orellana, Eliana Linares Perea, Carmen Fernández de Castro — 2012
• DTome: a web-based tool for drug-target interactome constructionElham Bagheri — 2012
• Unbiased label-free quantitative proteomic profiling and enriched proteomic pathways in seminal plasma of adult men before and after varicocelectomy.Mariana Camargo, Paula Intasqui Lopes, P.T. Del Giudice — 2013
• dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modificationsЯркова Наталья Александровна, Соловьянова Елена Николаевна, Филина Лариса Васильевна — 2012
• Algorithms to Explore the Structure and Evolution of Biological NetworksCarleton L. Kingsford, Saket Navlakha — 2010
• Investigating tumour evolution through graph theoretical analysis of gene regulatory networksAlex Upton — 2014
• A Novel Method to Detect Functional Subgraphs in Biomolecular NetworksSterling Thomas — 2010
• Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology.Thottethodi Subrahmanya Keshava Prasad, Kumaran Kandasamy, Akhilesh Pandey — 2009
• Inference of Synechocystis protein interaction networkMagali Michaut, Samuel Kerrien, Luisa Montecchi‐Palazzi — 2008
• InterPro protein classification.Jennifer McDowall, Sarah Hunter — 2011
• Connecting Seed Lists of Mammalian Proteins Using Steiner TreesAmelia White, Avi Ma’ayan — 2007
• Elucidation of the Cardiac Myogenesis Regulatory NetworkJay H. Konieczka — 2008
• Computational methods in protein structure comparison and analysis of protein interaction networksElena Zotenko — 2007
• Towards the integration of structural and systems biology: Structure-based studies of protein-protein interactions on a genome-wide scaleQ. Zhang — 2011
• Exploring the function and evolution of proteins using domain familiesAdam J. Reid — 2009
• Reverse Chemical GeneticsHisashi Koga — 2009

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