TM-align: a protein structure alignment algorithm based on the TM-score

Keywords

Structural alignment, Protein Data Bank (RCSB PDB), Protein Data Bank, Algorithm, Sequence alignment

References

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Cited by

• Conformational Heterogeneity Within the LID Domain Mediates Substrate Binding to Escherichia coli Adenylate Kinase: Function Follows FluctuationsTravis P. Schrank, James O. Wrabl, Vincent J. Hilser — 2013
• On the origin and highly likely completeness of single-domain protein structures.Yang Zhang, Isaac A. Hubner, Adrián K. Arakaki — 2006
• Superimposé: a 3D structural superposition serverMeng‐Fen Yen, Yen, Meng-Feng — 2008
• A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human GenomeMu Gao, Jeffrey Skolnick — 2009
• Cofactor Requirement of HpyAV Restriction Endonuclease西村洋一, 佐野文武, 西村幸利 — 2010
• Optimal Pairwise Alignment of Fixed protein Structures in Subquadratic TimeStephen Lamb, Sara Glover, Anne Walstab — 2011
• An automated approach to network features of protein structure ensemblesCarol Norris — 2013
• Global and local structural similarity in protein–protein complexes: Implications for template-based dockingSantiago Posteguillo, Juan Carlos Palmer — 2013
• Forcefield_NCAA: Ab Initio Charge Parameters to Aid in the Discovery and Design of Therapeutic Proteins and Peptides with Unnatural Amino Acids and Their Application to Complement Inhibitors of the Compstatin FamilyRintarō Satō — 2014
• Is atomic rearrangement of type IV PHA synthases responsible for increased PHA production?Aamira Tariq, Abdul Hameed, Habib Bokhari — 2015
• Self-cleavage of the Pseudomonas aeruginosa Cell-surface Signaling Anti-sigma Factor FoxR Occurs through an N-O Acyl Rearrangement*Marco Peirolo — 2015
• UniAlign: protein structure alignment meets evolutionF. van Beek — 2015
• Analysis of the complex formation, interaction and electron transfer pathway between the "open" conformation of NADPH-cytochrome P450 reductase and aromatase.Robert L. Simon — 2015
• A structural, functional, and computational analysis suggests pore flexibility as the base for the poor selectivity of CNG channelsAndré Gide — 2015
• On Representing Protein Folding Patterns Using Non-Linear Parametric CurvesSusmita Sur‐Kolay, Satyajit Banerjee, C.A. Murthy — 2014
• G‐LoSA: An efficient computational tool for local structure‐centric biological studies and drug designLuis F. de Armas — 2016
• Quality Assessment of Predicted Protein Models Using Energies Calculated by the Fragment Molecular Orbital MethodPaulo Jorge Nunes Ferreira — 2015
• Recent advances in sequence-based protein structure predictionE.J. Steinhardt — 2017
• A new definition and properties of the similarity value between two protein structuresKateh Esmaeli — 2016
• LRFragLib: an effective algorithm to identify fragments for de novo protein structure predictionMaría Isabel Lapeña — 2016

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