Maximum likelihood alignment of DNA sequences.
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Summary
A simple model with two parameters is presented and a method is described by which the likelihood may be computed, which allows us to obtain the best alignments under the model.
- Type
- article
- Published
- 1986-07-20
- Cited by
- 139
- References
- 11
- OpenAlex
- https://openalex.org/W2091913260
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:30386407
Keywords
Maximum likelihood, Simple (philosophy), Sequence (biology), Probabilistic logic, Maximum likelihood sequence estimation
References
- Statistical inference of phylogenies
- Time Warps, String Edits, and Macromolecules: The Theory and Practice of Sequence Comparison
- Sequence and gene organization of mouse mitochondrial DNA.
- Numerical Methods for Inferring Evolutionary Trees
- Complete sequence of bovine mitochondrial DNA. Conserved features of the mammalian mitochondrial genome.
- Algorithms for computing evolutionary similarity measures with length independent gap penalties
- Assessing the significance of local sequence homologies
- A general method applicable to the search for similarities in the amino acid sequence of two proteins.
- Sequence and organization of the human mitochondrial genome
- An Introduction to Probability Theory and Its Applications
- Statistical Decision Theory and Related Topics
- An introduction to probability theory and its applications
- Algorithms for computing evolutionary similarity measures with length independent gap penalties
Cited by
- Combining sequence and structure information in protein alignments
- Bayesian structural phylogenetics
- Biologie moléculaire et phylogenèse des Lémuriformes (Primates de Madagascar)
- Algorithms for string matching with applications in molecular biology
- Rare event simulation for statistical model checking. (Simulation d'événements rares pour le model checking statistique)
- Digital Libraries and Multimedia
- Computational statistics in molecular phylogenetics
- Harnessing Social Networks for Social Awareness via Mobile Face Recognition
- Tune Retrieval in the Multimedia Library
- A Sequence Similarity Search Algorithm Based on a Probabilistic Interpretation of an Alignment Scoring System
- Probabilistic Model-Based Approach to Evolutionary Analysis of Non-Coding Sequences
- Multiple sequence alignment for phylogenetic purposes
- Towards the digital music library: tune retrieval from acoustic input
- Template-based spike pattern identification with linear convolution and dynamic time warping.
- Scaling Laws and Similarity Detection in Sequence Alignment with Gaps
- Statistical alignment: computational properties, homology testing and goodness-of-fit.
- DIALIGN2: Improvement of the segment to segment approach to multiple sequence alignment
- Stochastic models of molecular evolution and the estimation of phylogeny and rates of nucleotide substitution in the hominoid primates
- Tree-based maximal likelihood substitution matrices and hidden Markov models
- Study of Topic Life Cycle Based on Hierarchical HMM
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