Total number of coding open reading frames in the yeast genome

Keywords

ORFS, Biology, Open reading frame, Genome, Gene

References

• Biometry: The Principles and Practice of Statistics in Biological ResearchRobert R. Sokal, F. James Rohlf — 1969
• Complete DNA sequence of yeast chromosome II.Horst Feldmann, M. Aigle, Gordana Aljinovic — 1994
• Codon selection in yeast.Jeffrey L. Bennetzen, B. D. Hall — 1982
• Functional analysis of the yeast genome.Elizabeth A. Winzeler, Ronald W. Davis — 1997
• The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications.Paul M. Sharp, Wen‐Hsiung Li — 1987
• The yeast genome project: what did we learn?Bernard Dujon — 1996
• Generation of overlapping open reading frames.S. Cebrat, Mirosław R. Dudek — 1996
• Bioinformatics and the discovery of gene function.Georg Casari, Antoine de Daruvar, Chris Sander — 1996
• SOME HINTS ON OPEN READING FRAME STATISTICS — HOW ORF LENGTH DEPENDS ON SELECTIONAgnieszka Gierlik, PAWEŁ MACKIEWICZ, Maria Kowalczuk — 1999
• Life with 6000 GenesA. Goffeau, B. G. Barrell, Howard Bussey — 1996
• Asymmetry of Coding Versus Noncoding Strand in Coding Sequences of Different GenomesS. Cebrat, Mirosław R. Dudek, PAWEŁ MACKIEWICZ — 1997
• Complete DNA sequence of yeast chromosome XIBernard Dujon, Despina Alexandraki, B. André — 1994
• Overview of the yeast genome.Hans‐Werner Mewes, Kaj Albermann, M. Bähr — 1997
• Erratum: Overview of the yeast genomeH. Mewes, K. Albermann, M. Bähr — 1997

Cited by

• Environmental systems biology of temperature adaptation in yeastCaroline M. Paget — 2013
• DNA asymmetry and the replicational mutational pressure.Maria Kowalczuk, Dorota Mackiewicz, Dorota Mackiewicz — 2001
• Application and assessment of experimental methods to study the cytosolic primary metabolism of yeastRoeland Costenoble — 2008
• Defining Genes in the Genomics EraM Snyder, Mark Gerstein — 2003
• Protein structure prediction in the postgenomic era.David T. Jones — 2000
• How many protein‐coding genes are there in the Saccharomyces cerevisiae genome?Paweł Mackiewicz, Maria Kowalczuk, Dorota Mackiewicz — 2002
• Global analysis of protein expression in yeastSina Ghaemmaghami, Won‐Ki Huh, Kiowa Bower — 2003
• A question of size: the eukaryotic proteome and the problems in defining it.Paul M. Harrison — 2002
• Genomic Exploration of the Hemiascomycetous Yeasts: 19. Ascomycetes‐specific genesAlain Malpertuy, Fredj Tekaia, Serge Casarégola — 2000
• Stability studies of recombinant Saccharomyces cerevisiae in the presence of varying selection pressure.J. C. Gupta, Krishna Jyoti Mukherjee — 2002
• Sequencing and comparison of yeast species to identify genes and regulatory elementsManolis Kellis, Nick Patterson, Matthew G. Endrizzi — 2003
• Transcriptome identification of putative genes involved in protein catabolism and innate immune response in human body louse (Pediculicidae: Pediculus humanus).Joao H. F. Pedra, Amanda S. Brandt, Hongmei Li‐Byarlay — 2003
• Four years of post‐genomic life with 6000 yeast genesAndré Goffeau — 2000
• Functional analysis of the yeast genomePetra Ross‐Macdonald — 2000
• Methods in Comparative Genomics: Genome Correspondence, Gene Identification and Regulatory Motif DiscoveryManolis Kellis, Nick Patterson, Bruce W. Birren — 2004
• The yeast genome: on the road to the Golden Age.Mark Johnston — 2000
• Arabidopsis and the Genetic Potential for the Phytoremediation of Toxic Elemental and Organic PollutantsChristopher S. Cobbett, Richard B. Meagher — 2002
• Invariant scaling relations across tree-dominated communitiesBrian J. Enquist, Karl J. Niklas — 2001
• Diauxic shift-dependent relocalization of decapping activators Dhh1 and Pat1 to polysomal complexesSheona P. Drummond, John Hildyard, Helena Firczuk — 2011
• Rapid isolation of monoclonal antibodies. Monitoring enzymes in the phytochelatin synthesis pathway.Yujing Li, Muthugapatti K. Kandasamy, Richard B. Meagher — 2001

Related papers

• The Sequence of a 36·7 kb Segment on the Left Arm of Chromosome IV from Saccharomyces cerevisiae Reveals 20 Non‐overlapping Open Reading Frames (ORFs) Including SIT4, FAD1, NAM1, RNA11, SIR2, NAT1, PRP9, ACT2 and MPS1 and 11 New ORFsARI-MATTI SARÉN, PÄIVI LAAMANEN, JAVIER BEASCOECHEA LEJARCEGUI — 1997
• Analysis of a 42·5 kb DNA sequence of chromosome X reveals three tRNA genes and 14 new open reading frames including a gene most probably belonging to the family of ubiquitin–protein ligasesMeng‐Er Huang, Jean‐Claude Chuat, Francis Galibert — 1995
• Sequencing analysis of a 15·4 kb fragment of yeast chromosome XIV identifies the RPD3, PAS8 and KRE1 loci, and five new open reading framesM. Maftahi, Jean‐Marc Nicaud, H. Lévesque — 1995
• The 172 kb prkA-addAB region from 83° to 97° of the Bacillus subtilis chromosome contains several dysfunctional genes, the glyB marker, many genes encoding transporter proteins, and the ubiquitous hit geneMichiel Noback, Siger Holsappel, Rense Kiewiet — 1998
• Identification of salt-induced genes of by using GeneFiltersSung Ah Schoondermark-Stolk, E TERSCHURE, C. Theo Verrips — 2002
• Sequence characterization of two new members of a multi-gene family in Serpulina hyodysenteriae (B204) with homology to a 39 kDa surface exposed protein: vspC and D.Michael McCaman, Kim Auer, Wayne Foley — 1999
• II. Yeast sequencing reports. The sequence of a 32 420 bp segment located on the right arm of chromosome II from Saccharomyces cerevisiaeKim Holmstrøm, Tove Brandt, Torben Kallesøe — 1994
• The DNA sequence analysis of the HAP4–LAP4 region on chromosome XI of Saccharomyces cerevisiae suggests the presence of a second aspartate aminotransferase gene in yeastGeneviève Chéret, C. Pallier, M. Valens — 1993
• Finding Protein-Coding Genes through Human PolymorphismsEdward Wijaya, Martin C. Frith, Paul Horton — 2013
• Consideration of the evolution of the Saccharomyces cerevisiae MEL gene family on the basis of the nucleotide sequences of the genes and their flanking regionsHilkka Turakainen, Paula Kristo, Matti Korhola — 1994