Fast and accurate automatic structure prediction with HHpred
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Summary
Three fully automated versions of the HHpred server that participated in the community‐wide blind protein structure prediction competition CASP8 are described, each with the combination of usability, short response times and a model accuracy that is competitive with those of the best servers in CASP 8.
- Type
- article
- Published
- 2009-01-01
- Cited by
- 457
- References
- 15
- Access
- Open access
- OpenAlex
- https://openalex.org/W2073895233
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:12750074
Keywords
Computer science, Server, Usability, CASP, Protein structure prediction
References
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- Prediction of CASP6 structures using automated robetta protocols
- PROTEINS: Structure, Function, and Bioinformatics Suppl 7:157–166 (2005) Prediction of CASP6 Structures Using Automated Robetta Protocols
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- HMMerThread: Detecting Remote, Functional Conserved Domains in Entire Genomes by Combining Relaxed Sequence-Database Searches with Fold Recognition
- Investigating the Allosteric Regulation of YfiN from Pseudomonas aeruginosa: Clues from the Structure of the Catalytic Domain
- Computational enzyme design approaches with significant biological outcomes: progress and challenges
- Supersize me: Cronobacter sakazakii phage GAP32.
- Sigma-RF: prediction of the variability of spatial restraints in template-based modeling by random forest
- LRFragLib: an effective algorithm to identify fragments for de novo protein structure prediction
- Purificação, caracterização, cristalização e modelagem molecular teórica da fração giroxina do veneno de Crotalus durissus terrificus (Laurenti 1768)
- Computational Structural Biology of Macromolecular Interactions
- Bacteriophage module reshuffling results in adaptive host range as exemplified by the baseplate model of listerial phage A118.
- Molecular Determinants for Unphosphorylated STAT3 Dimerization Determined by Integrative Modeling.
- Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria
- Probabilistic protein homology modeling
- Structural Learning for Template-free Protein Folding
- Graph-based Approaches to Protein Structure- and Function Prediction
- Statistical inference for template-based protein structure prediction
- Defining the limits of homology modeling in information‐driven protein docking
- Draft Genome Sequences of Ciliovirus and Brinovirus from San Francisco Wastewater
- Structure of the stationary phase survival protein YuiC from B.subtilis
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- Meeting review: the Second meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP2), Asilomar, California, December 13-16, 1996.