BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences.

Keywords

Unix, File Transfer Protocol, Computer science, Sequence (biology), Biology

References

• Local alignment statistics.Stephen F. Altschul, Warren Gish — 1996
• Optimal sequence alignment using affine gap costs.Stephen F. Altschul, Bruce W. Erickson — 1986
• Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pyloriRichard A. Alm, Losee L. Ling, Donald T. Moir — 1999
• Statistics of Local Complexity in Amino Acid Sequences and Sequence DatabasesJohn C. Wootton, Scott Federhen — 1993
• Basic local alignment search tool.Stephen F. Altschul, Warren Gish, Webb Miller — 1990
• A general method applicable to the search for similarities in the amino acid sequence of two proteins.Saul B. Needleman, Christian D. Wunsch — 1970
• Identification of common molecular subsequences.Temple F. Smith, Michael S. Waterman — 1981
• Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.Samuel Karlin, Stephen F. Altschul — 1990
• The complete genome sequence of the gastric pathogen Helicobacter pyloriJean-F. Tomb, Owen White, Anthony R. Kerlavage — 1997
• Amino acid substitution matrices from protein blocks.Steven Henikoff, Jorja G. Henikoff — 1992
• Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.Stephen F. Altschul — 1997

Cited by

• Gene clpP2Encoding Peptidase in the Synechocystissp. PCC 6803 Cyanobacterium Controls Cell Sensitivity to PhotoinhibitionВ. Б. Паничкин, V. M. Glaser, В.В. Зинченко — 2001
• Etude des interactions entre métaux lourds et champignons ectomycorhiziens : mise en évidence de gènes impliqués dans la réponse au cadmium de Paxillus involutusChristophe Jacob — 2001
• LACK OF MUTATIONS OF TYPE 1 11β-HYDROXYSTEROID DEHYDROGENASE GENE IN PATIENTS WITH ABDOMINAL OBESITYBarbara Grosh — 2001
• The sequence of a 200 kb portion of a Plasmodium vivax chromosome reveals a high degree of conservation with Plasmodium falciparum chromosome 3.В. Д. Лобашев — 2001
• Inhibition of trypsin by cowpea thionin: Characterization, molecular modeling, and dockingLuis F. Díaz Domínguez, Miguel Ángel Navarro Huerga — 2002
• Selective associations with signaling proteins determine stimulatory versus costimulatory activity of NKG2DV.E. Lapshin — 2002
• Computational and experimental analysis reveals a novel Src family kinase in the C. elegans genome.Akhilesh Pandey, Suraj Peri, Colin Thacker — 2003
• Molecular evolution of the leptin exon 3 in some species of the family CanidaeM. Gibbs — 2003
• Atomic contact vectors in protein‐protein recognitionJulian Mintseris, Zhiping Weng — 2003
• Morphology and genome organization of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: a novel virus family, the Globuloviridae.José Luís Barrio Moya — 2004
• Differential gene expression during wing morph differentiation of the ectoparasitoid Melittobia digitata (Hym., Eulophidae).和雄 長瀬 — 2004
• Isolation and properties of methanesulfonate-degrading Afipia felis from Antarctica and comparison with other strains of A. felis.Ivan Mambrillas i Finestra — 2005
• Conservation of promoter, coding and intronic regions of the non-classical MHC class II DYA gene suggests evolution under functional constraints.Francesca Bignami — 2005
• Truncating mutations in the ACVR2 gene attenuates activin signaling in prostate cancer cells.Joseph A. Guzinsky — 2005
• Bacillus anthracis Virulent Plasmid pX02 Genes Found in Large Plasmids of Two Other Bacillus Species理 小林, 祐司 山本, 聡 田村 — 2006
• Single base‐pair substitutions in exon–intron junctions of human genes: nature, distribution, and consequences for mRNA splicingMontserrat Martínez Vázquez — 2007
• Transgenic analysis of Dlx regulation in fish tooth development reveals evolutionary retention of enhancer function despite organ lossBoris S. Kerner, V. F. Sinkevich — 2006
• Sequence Characterization and Comparative Analysis of Three Plasmids Isolated from Environmental Vibrio sppSimon van den Berg — 2007
• The effect of long-term nitrate treatment on SRB activity, corrosion rate and bacterial community composition in offshore water injection systemsM. Mercedes Tudela — 2008
• Complete Genome of the Broad-Host-Range Erwinia amylovora Phage ΦEa21-4 and Its Relationship to Salmonella Phage Felix O1Rafael Ávila Soto — 2009

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