The Jpred 3 secondary structure prediction server
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Summary
The new JPred 3 server includes significant usability improvements that include clearer feedback of the progress or failure of submitted requests and a new software pipeline will enable Jnet/Jpred to continue to be updated in sync with major updates to SCOP and UniProt and so ensures that Jpred 3 will maintain high-accuracy predictions.
- Type
- article
- Published
- 2008-05-07
- Cited by
- 1,603
- References
- 37
- Access
- Open access
- OpenAlex
- https://openalex.org/W2060178110
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:579915
Keywords
Pipeline (software), UniProt, Sequence (biology), Usability, Software
References
- Structural genomics programs at the US National Institute of General Medical Sciences
- Prediction of the secondary structure of proteins from their amino acid sequence.
- Improving the accuracy of protein secondary structure prediction using structural alignment
- JPred: a consensus secondary structure prediction server
- Prediction of protein secondary structure at better than 70% accuracy.
- Prediction of protein secondary structure and active sites using the alignment of homologous sequences.
- Toward High-Resolution de Novo Structure Prediction for Small Proteins
- Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpoint
- Predicting coiled coils from protein sequences
- Predicting novel protein folds by using FRAGFOLD
- High resolution protein structure prediction and the crystallographic phase problem
- Basic local alignment search tool.
- Review: protein secondary structure prediction continues to rise.
- Algorithms for prediction of alpha-helical and beta-structural regions in globular proteins.
- UniRef: comprehensive and non-redundant UniProt reference clusters
- SCOP: a structural classification of proteins database for the investigation of sequences and structures.
- ALSCRIPT: a tool to format multiple sequence alignments.
- Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins.
- Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches
- Evaluation and improvements in the automatic alignment of protein sequences.
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