UniProtKB/Swiss-Prot.
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Summary
The purpose of this chapter is to present a guided tour of a UniProtKB/Swiss-Prot entry, paying particular attention to the specificities of plant protein annotation, and some of the tools and databases that are linked to each entry.
- Type
- article
- Published
- 2007-01-01
- Cited by
- 653
- References
- 17
- OpenAlex
- https://openalex.org/W24553703
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:208891256
Keywords
UniProt, Computer science, Resource (disambiguation), World Wide Web, Information retrieval
References
- ScanProsite: a reference implementation of a PROSITE scanning tool.
- Protein identification and analysis tools in the ExPASy server.
- The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools.
- Basic local alignment search tool.
- MaizeGDB, the community database for maize genetics and genomics
- SRS - an indexing and retrieval tool for flat file data libraries
- The ENZYME database in 2000
- The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community
- Public web-based services from the European Bioinformatics Institute
- ExPASy: the proteomics server for in-depth protein knowledge and analysis
- Gramene, a Tool for Grass Genomics
- The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
- GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts
- The Universal Protein Resource (UniProt)
- Swiss-Prot: Juggling between evolution and stability
- Plant Protein Annotation in the UniProt Knowledgebase1
- Numerical Recipes in C, 2nd Edition
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- Transcriptome of the bivalve Limecola balthica L. from Western Pacific: A new resource for studies of European populations.
- Web Service Mining
- DrugBank: A General Resource for Pharmaceutical and Pharmacological Research
- ASPicDB: a database web tool for alternative splicing analysis.
- Bacterial ghosts as carrier of Her-2/neu subunit vaccines
- PathExplorer: Service Mining for Biological Pathways on the Web
- Creation, evaluation, and use of PSI, a program for identifying protein-phenotype relationships and comparing protein content in groups of organisms
- Maternal and zygotic transcriptomes in the appendicularian, Oikopleura dioica: novel protein-encoding genes, intra-species sequence variations, and trans-spliced RNA leader
- Insight into the LGP2 Helicase Domain – An in Silico Approach
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- Data for comparative proteomics analysis of the antitumor effect of CIGB-552 peptide in HT-29 colon adenocarcinoma cells
- Named entity recognition : challenges in document annotation, gazetteer construction and disambiguation
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