Compressed Adjacency Matrices: Untangling Gene Regulatory Networks
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- Type
- article
- Published
- 2012-12-01
- Cited by
- 60
- References
- 47
- OpenAlex
- https://openalex.org/W2059018062
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:17017463
Keywords
Adjacency matrix, Adjacency list, Computer science, Node (physics), Visualization
References
- Vizster: visualizing online social networks
- ZAME: Interactive Large-Scale Graph Visualization
- ImPrEd: An Improved Force‐Directed Algorithm that Prevents Nodes from Crossing Edges
- Reactome knowledgebase of human biological pathways and processes
- BiologicalNetworks 2.0 - an integrative view of genome biology data
- Techniques for clustering gene expression data
- Unraveling Protein Networks with Power Graph Analysis
- BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics
- Reactome: a database of reactions, pathways and biological processes
- No-Three-in-Line-in-3D
- Tidier Drawings of Trees
- Methods for Visual Understanding of Hierarchical System Structures
- VisANT 3.0: new modules for pathway visualization, editing, prediction and construction
- Using multilevel call matrices in large software projects
- An Evaluation of Microarray Visualization Tools for Biological Insight
- Task taxonomy for graph visualization
- NodeTrix: a Hybrid Visualization of Social Networks
- GeneaQuilts: A System for Exploring Large Genealogies
- Problem Decomposition and Data Reorganization by a Clustering Technique
- Drawing Power Law Graphs Using a Local/Global Decomposition
Cited by
- The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases
- HOLA: Human-like Orthogonal Network Layout
- Connections, changes, and cubes : unfolding dynamic networks for visual exploration. (Connexions, changement et cubes : déplier les réseaux dynamiques pour l'exploration visuelle)
- PathwayMatrix: visualizing binary relationships between proteins in biological pathways
- Papilio: Visualizing Android Application Permissions
- Visual Analysis of Sets of Heterogeneous Matrices Using Projection‐Based Distance Functions and Semantic Zoom
- Adaptive Semantics Visualization
- Visualizing Multidimensional Data with Glyph SPLOMs
- Edge Compression Techniques for Visualization of Dense Directed Graphs
- Scalable network traffic visualization using compressed graphs
- The Effects of Representation and Juxtaposition on Graphical Perception of Matrix Visualization
- A survey on information visualization: recent advances and challenges
- A decision support system for the technical sustainability assessment of water distribution systems
- Visualizing Time-Dependent Variables of Water Distribution Systems
- Visual analysis of patterns in multiple amino acid mutation graphs
- A Survey of Visual Analytics Techniques and Applications: State-of-the-Art Research and Future Challenges
- Adjasankey: Visualization of Huge Hierarchical Weighted and Directed Graphs
- Interactive visualization of dynamic multivariate networks
- Block-Organized Topology Visualization for Visual Exploration of Signed Networks
- A MapReduce-based approach for computing reachability preserving graph
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