The KUPNetViz: a biological network viewer for multiple -omics datasets in kidney diseases
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Summary
The KUPNetViz is an interactive and flexible biological network visualization and exploration tool that provides renal biologists with biological network snapshots of the complex integrated data of the KUPKB allowing the formulation of new hypotheses in a user friendly manner.
- Type
- dissertation
- Published
- 2013-07-24
- Cited by
- 13
- References
- 58
- Access
- Open access
- OpenAlex
- https://openalex.org/W23883183
- Semantic Scholar
- https://api.semanticscholar.org/CorpusID:6864266
Keywords
DNA damage, Breast cancer, Superoxide dismutase, Catalase, Comet assay
References
- Unique changes in interstitial extracellular matrix composition are associated with rejection and cyclosporine toxicity in human renal allograft biopsies.
- Transcriptional Profiling of Native Inner Medullary Collecting Duct Cells from Rat Kidney
- Graph Drawing Software
- VANTED: A system for advanced data analysis and visualization in the context of biological networks
- Mass spectrometry-based metabolomics.
- Altered expression of calreticulin during the development of fibrosis
- Immunization with DNA topoisomerase I and Freund's complete adjuvant induces skin and lung fibrosis and autoimmunity via interleukin-6 signaling.
- KEGG for integration and interpretation of large-scale molecular data sets
- BiologicalNetworks 2.0 - an integrative view of genome biology data
- Arena3D: visualizing time-driven phenotypic differences in biological systems
- miRBase: integrating microRNA annotation and deep-sequencing data
- Establishing the Molecular Pathways Involved in Chronic Allograft Nephropathy for Testing New Noninvasive Diagnostic Markers
- Visualization of omics data for systems biology
- Endothelin-Mediated Oncofetal Fibronectin Expression in Chronic Allograft Nephropathy
- Exploiting Statistical Methodologies and Controlled Vocabularies for Prioritized Functional Analysis of Genomic Experiments: the StRAnGER Web Application
- Multiplexed protein measurement: technologies and applications of protein and antibody arrays
- In-depth proteomic profiling of the normal human kidney glomerulus using two-dimensional protein prefractionation in combination with liquid chromatography-tandem mass spectrometry.
- VANLO - Interactive visual exploration of aligned biological networks
- Interleukin-6, its role in fibrosing conditions.
- The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
Cited by
- A Hybrid Computational Method for the Discovery of Novel Reproduction-Related Genes
- A tool for comparing multirelational networks from biology
- Clinical proteomic biomarkers: relevant issues on study design & technical considerations in biomarker development
- The application of multi-omics and systems biology to identify therapeutic targets in chronic kidney disease.
- Identifying novel protein phenotype annotations by hybridizing protein–protein interactions and protein sequence similarities
- The nephrologist of tomorrow: towards a kidney-omic future
- Omics databases on kidney disease: where they can be found and how to benefit from them
- Mining for genes related to choroidal neovascularization based on the shortest path algorithm and protein interaction information.
- Inflammation-Related Mechanisms in Chronic Kidney Disease Prediction, Progression, and Outcome
- Omic approaches to decipher the molecular mechanisms of fibrosis, and design new anti-fibrotic strategies.
- Big Data in Nephrology
- Two Decades of Biological Pathway Databases: Results and Challenges
- Omics Tools for Exploration of Renal Disorders
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