BIGSdb: Scalable analysis of bacterial genome variation at the population level

Keywords

Multilocus sequence typing, Genomics, Annotation, Scalability, Genome

References

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Cited by

• A waterborne outbreak with a single clone of Campylobacter jejuni in the Danish town of Køge in May 2010Katrin Hartwig, Georg Mandelka — 2012
• Multilocus Sequence Typing Scheme for the Characterization of 936-Like Phages Infecting Lactococcus lactisMaxim Moisan, Sylvain Moineau — 2012
• Research advances in the study of Campylobacter, Helicobacter, and Related OrganismsTakashi Ichikawa — 2012
• Diagnosis of Clostridium difficile Infection: an Ongoing Conundrum for Clinicians and for Clinical LaboratoriesF.V. Bradow, G.R. Lockheed, Ronald L. Bradow — 2013
• Using multilocus sequence typing to study bacterial variation: prospects in the genomic era.R. Zebrowski, L. E. O. Mincer — 2014
• Cronobacter, the emergent bacterial pathogen Enterobacter sakazakii comes of age; MLST and whole genome sequence analysisÂngela Kátia Bottin Marques — 2014
• Antimicrobial resistance in Acinetobacter baumannii: From bench to bedside.Shiva Beharrysingh — 2014
• Combined Campylobacter jejuni and Campylobacter coli Rapid Testing and Molecular Epidemiology in Conventional Broiler FlocksSumie Jones — 2016
• Wolbachia from Drosophila incompta: just a hitchhiker shared by Drosophila in the New and Old World?Hamada Alshaer — 2016
• Changing plasmid types responsible for extended spectrum cephalosporin resistance in Escherichia coli O157:H7 in the United States, 1996–2009Maria José Garcia Henriques Pereira — 2014
• Serogroups and genotypes of Leptospira spp. strains from bovine aborted foetusesSusan Oberholzer — 2018
• A Primer on Infectious Disease Bacterial GenomicsС М Грігор’єв, В І Іванов, Т М Нестеренко — 2016
• First report of a cross-kingdom pathogenic bacterium, Achromobacter xylosoxidans isolated from stipe-rot Coprinus comatus.Luona Ye, Mengpei Guo, Pengfei Ren — 2018
• University-Based Outbreaks of Meningococcal Disease Caused by Serogroup B, United States, 2013–2018Jesús Lahera Forteza — 2019
• A proposed core genome scheme for analyses of the Salmonella genusWan Nurmaisarah, Wan Hamaruddin — 2020
• Recent developments in Blastocystis research.C Graham Clark, Mark van der Giezen, Mohammed A. Alfellani — 2013
• Genome evolution in Streptococcus pneumoniaeK. Wyres — 2012
• Microbiologie clinique et spectrométrie de masseStéphanie Suarez — 2013
• Diversity and virulence of the genus Cronobacter revealed by multilocus sequence typing (MLST) and comparative genomic analysisS. Joseph — 2013
• Vaccination Drives Changes in Metabolic and Virulence Profiles of Streptococcus pneumoniaeEleanor Watkins, Bridget S. Penman, José Lourenço — 2015

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